Acre022104.1
Basic Information
- Insect
- Apamea crenata
- Gene Symbol
- -
- Assembly
- GCA_949629185.1
- Location
- OX451368.1:13656198-13659109[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.2e-05 0.002 19.5 7.9 1 23 261 283 261 283 0.98 2 11 2.4e-05 0.0022 19.3 1.3 1 23 289 312 289 312 0.95 3 11 0.00054 0.049 15.1 0.7 1 23 322 344 322 344 0.98 4 11 0.011 1 11.0 2.7 1 23 351 373 351 373 0.97 5 11 4.4 4e+02 2.8 5.3 1 23 379 401 379 401 0.97 6 11 0.00013 0.011 17.1 0.3 1 23 407 430 407 430 0.95 7 11 0.0055 0.5 11.9 1.6 2 23 436 455 435 455 0.96 8 11 9.2e-07 8.3e-05 23.8 1.0 1 23 461 483 461 483 0.97 9 11 2.9e-05 0.0026 19.1 2.5 1 23 489 511 489 511 0.98 10 11 3.3e-05 0.003 18.9 0.9 1 23 517 540 517 540 0.97 11 11 0.41 37 6.0 0.3 1 21 546 566 546 567 0.93
Sequence Information
- Coding Sequence
- ATGGCTAACGTAAAGAGTAGATTAAATGCACCCAAAAGTGCATCTACAAAGAAGAAAAAGACgggacataaaacaaaaaaatcatctaCAGGTCCCAAGAAATCACCCTTGAAGAGAAATTATACAGAGAGCAACATAGTCATGAAACGACCAAGCTCCAGACTAGTCATGACACCAgatcaaaaaatcaaattctTATTGAAAAATGGGAATAAACTCAAGGAAAGATTTATTGCTAAACCACCTGTGAATGTCAAACCAATTCCTGCGGTAACTGTTGAGTCAAATCCTGAGCCGAGAGCTGAGCCAAGAGCTGAGCCACAAGGATGCTACAGCAAAACACAAGATAACAATCTTCCCCGTATGACAAAAACGGGGCaccttaaaaaaaagaaacagtgCAATATGAAACTTGTTGATAGCATTCTGATGAATGAACTGATGATTGGTGGCAAGAAAAATGTACATACTGATGATGCGCCTCCCGTAGAGGCACCTTCTCTGGCAGTGATACCTTTAAGAGTTGGTGTTGACAATAACAATGACACCCAAATAACAGACCAAAATAACACATCTCAAGACTACTCCGATGATGAtgtgtgtaaattatctgaTACTATCTCTACAAATTCTGGTGATTCAACAGATGATGAAAACTGCTCAGATTCCTCAAATGAGAAATCTGGGAGTAAAActtctcaaaagaaaaaaaaaataccatgtaAGCAAAAACCAAGACATATCACACTGAAAAATGGTGTCGTATTAAAATTAGAGTACTTTGAGTGTGACCATTGCAACAGAACATTTAACAGGAAATGCTCCTTACGTAGACACATGTATATGCATCTCGGTATAAAACCTTTTCAATGTCCTCATTGTCCTCAACAGTTCAGGAGCCCCTACAACATGCAGGTTCATGTCGACCGTTACCACAAGGCAAGTGAAGACGATCCAGAGCTTTTCATTTGCAATTTCTGTGAGAAACCATTTCTTGTAAAAGAAAACTTGAAGAAACATTTAGAAACTCACGTCGTTAGTGGAAGTTCATTCAAATGCATTTACTGTAACAAAGTGTTTGCGTACCATATCTTGTTGATGCAGCATGAGAAGAAACACATGGTCAAAGGACGCCATCAGTGCACACTGTGCAGTATGTCTTACAGCTGTCGCAATCTCCTGTACTTGCATGTAAAAAGCCATTTGAAAATCAAAGATTTTATTTGTCAATATTGTGGGAAAGAGTTTTTAAGACCGAATTCTCTGAAACGGCATGTTGAGGTAAGCCACGGTGAACATAGAATTGTGTGTCCAATTTGCAAAAAGAAATTGAAGGGTCATCTGACTGAGCATATGCGCACGCATGAGAAGAAGCGTCCGCATGTGTGTCCTGAGTGTGGACAACGGTTCACACAGTCCACTCAGCTGAATGTCCACCGTCGCGCGCACACCGGGGACAGGCCGTACCCTTGCCGCATATGCAAACGATTTTTTTCGCATTCTAACGCTCTCATGTTGCATATCAGACGCCACACAGGAGAGAAGCCTTTCCCATGTGCCATGTGTCCAATGTCCTTCTCTCAACTGCCACACATGAAAACGCACATGCGTAAAATTCATGGTAAAGAGAACCCATACAAATGCGCTAACTGTGATTCTTTTTACAAGCTCAAAGCGCAGCTTGATGTGCATGAGAAGTCTTGCATAGGGGGAGCAACTGTTGATCAACCAGTCAAAGGTAAAAAGAAAAGGTCCAAGAAGGTCCAGGACGAGATAGAAGTGGAGTCGGCGATGTCCTTGTCTCGCATGAGGTTCCTGTTGGCCCTTCTCCTCACGATGATCGCTACCAAAGAAAAACTCAAATACTTAGGGTTCAACAAACGCCTCGTAGATGAGATTCTTGTCGAGTCGTTGGAGGCTATGGACAAGACTCCTTGCAAAGACGAGACTCTCACGCCGGCCAAGCgtctaaagaaaaatattgaaatgttcATAAGTGGAACAGTACCTAAAGTACAGCTGGCTACCTTCAAGAAAGAGAACAAGTCGACCGAGGACATTCTGGAACTGTTGACTACTGAGAAAGATAAGTAA
- Protein Sequence
- MANVKSRLNAPKSASTKKKKTGHKTKKSSTGPKKSPLKRNYTESNIVMKRPSSRLVMTPDQKIKFLLKNGNKLKERFIAKPPVNVKPIPAVTVESNPEPRAEPRAEPQGCYSKTQDNNLPRMTKTGHLKKKKQCNMKLVDSILMNELMIGGKKNVHTDDAPPVEAPSLAVIPLRVGVDNNNDTQITDQNNTSQDYSDDDVCKLSDTISTNSGDSTDDENCSDSSNEKSGSKTSQKKKKIPCKQKPRHITLKNGVVLKLEYFECDHCNRTFNRKCSLRRHMYMHLGIKPFQCPHCPQQFRSPYNMQVHVDRYHKASEDDPELFICNFCEKPFLVKENLKKHLETHVVSGSSFKCIYCNKVFAYHILLMQHEKKHMVKGRHQCTLCSMSYSCRNLLYLHVKSHLKIKDFICQYCGKEFLRPNSLKRHVEVSHGEHRIVCPICKKKLKGHLTEHMRTHEKKRPHVCPECGQRFTQSTQLNVHRRAHTGDRPYPCRICKRFFSHSNALMLHIRRHTGEKPFPCAMCPMSFSQLPHMKTHMRKIHGKENPYKCANCDSFYKLKAQLDVHEKSCIGGATVDQPVKGKKKRSKKVQDEIEVESAMSLSRMRFLLALLLTMIATKEKLKYLGFNKRLVDEILVESLEAMDKTPCKDETLTPAKRLKKNIEMFISGTVPKVQLATFKKENKSTEDILELLTTEKDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00173494;
- 90% Identity
- iTF_00667822;
- 80% Identity
- -