Acre032684.1
Basic Information
- Insect
- Apamea crenata
- Gene Symbol
- -
- Assembly
- GCA_949629185.1
- Location
- OX451382.1:3690020-3700001[+]
Transcription Factor Domain
- TF Family
- PAX
- Domain
- PAX domain
- PFAM
- PF00292
- TF Group
- Helix-turn-helix
- Description
- The paired domain, a ~126 amino acid DNA-binding domain, is found in eukaryotic transcription regulatory proteins involved in embryogenesis. Initially identified in Drosophila’s paired (prd) protein, it typically resides in the N-terminal region and may be followed by an octapeptide, a homeodomain, or a Pro-Ser-Thr-rich C terminus. Paired domain proteins act as transcription repressors or activators, with DNA-binding specificity mediated by three subdomains. Crystal structures reveal a bipartite DNA-binding paired domain: an N-terminal subdomain (PAI) and a C-terminal subdomain (RED), linked by a flexible linker. Both subdomains contain a helix-turn-helix motif that binds DNA's major groove, while the linker may bind the minor groove. Variations in domain usage across Pax proteins and isoforms determine sequence specificity.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0021 3.8 8.5 0.0 4 62 353 411 350 453 0.89 2 2 5.3e-05 0.097 13.6 0.0 16 85 480 549 474 564 0.84
Sequence Information
- Coding Sequence
- ATGAGGTGCTGTGTTCAGAATTGCACTAATGATGActtgaagaaaacaaataaaagcaaTGGAATCACATTTCATAAgttACCGAAGGATCCAGTCCTTTGCTCTGTCTGGTTAAGAGTTTTAGCTAAAGCGGGTTGCCGGCTGAGCAAGTGGCTTGTTGTGTGCTCTGATCATTTTCTACCTGAAGATTTTGACTACACACGGCCCAACCAGCGAAGAGTTAAAAGTGGGGCAGTTCCCACTCTGgtgtgCAGAGTGTGCTTAGCTTTagatgtcaaaatgtatgatatGAAGGACTTCAAATTGAGCGAAATGTTCCAAAATGTGACGGGAATATCGGCTTGCGACAAAAAGGACAGCGTACTCCATCGTGTATGTTGGGAGTGTACAGCGCGGCTGACAGCGGCTGCAGCGTTCAAAGACAAAGCGCTGCTCAGCGATACACTGCTGAAAGACATAGTAAACCTCAAACATAGTGACATCACATTATTAAAACAGAACCATAGTTCTCTCAAATCACCTCTAACCGTCCAGACAGTATTCACTTCATCTGATATTGAATGTGAAGACACTATCATTGAAAACAAAGAAATCGAAATATTACTCGATGAAGAGACAGGTGACAGAGAAAGAAAATCTGAATTACGTAttatggaagaagaaaaagagATAGAATTCGAGGAGTATGAGCCTTGGATAGATGTCCCTATGAAAACTGAAATGGAGTCGGATCCCATAGCTGAAAATAACATAGCTAGAAAAAGCGATGCATTTACAAAACCTACCCATTTCAATGTGGTTTCTACATCTAGTGAAGGTGAAGaagatgaaataataaatactgaagaacaaattaataataatgaaaaggtTTTAAGTGAAGATACCAAAATTACTAGTGTACCAATAGTAAATGAAGGTGGTACCATCGTTCTAGTAGATGATAAAGACAAGAAATTAAAACTTGATGGTATCGTTAATATTGTGGACGAGTCCTCGAGCGAAGAAGAGACGCTGGCTACTGTAAAAGATTTGTCTGTTAATAAGGCTAAGCAGAGGGTGAACAGTAACGTTGGGACTTCGAATAAAAGAGTCAGGCTAAACGacaagataaaagaaaaaattattgCGCTGAAGAAAAACGGACTCTCTGTCCGTGCAATAGCTAAGGAAACAGGATTGTCGATAGCATCCGTTGACCGTTGGTGGAGTCGCTATCGCAAAAACGGTAATACTTACCGTAAATCTGACACTGCAGAGGCAGACGACATTGATCCAAAACCGAATTATTGTGACGAACTGGTCGAACCTGGAAAAGAGATGGGGGCTTGCTCTGCAGTTGTGAGACAAAGGTTGCACGAAGCTGGGTTCGAACATATACTCATGAAAAAGCCTGAAAGAAATGGGAAAATAGAAAAGATAGCAACTAGCAAGCATAAAGCGCTACATGACGATTTAAAAGAACGAATAATAGCGCTGAAGCAAGAAGGAATGACAAATAGCCGGATAGCCTACCTGTTGGATACTTCGcgAATAACAGTTCGTAAGTGGTGGAGCCGCTGGTGCAATGAAGGTCACATGCAGAACGGCAAACAGACTGGGAGGAAAAGGAAAACTACGCCGGAAGAAGACCAGCTCTTAATAGAGCGGGTGACTCAAGAGCAAACTGTCCATACGCCCTCTCTAGCTATGGAATTAGGCGTATCTCCAGAGTAA
- Protein Sequence
- MRCCVQNCTNDDLKKTNKSNGITFHKLPKDPVLCSVWLRVLAKAGCRLSKWLVVCSDHFLPEDFDYTRPNQRRVKSGAVPTLVCRVCLALDVKMYDMKDFKLSEMFQNVTGISACDKKDSVLHRVCWECTARLTAAAAFKDKALLSDTLLKDIVNLKHSDITLLKQNHSSLKSPLTVQTVFTSSDIECEDTIIENKEIEILLDEETGDRERKSELRIMEEEKEIEFEEYEPWIDVPMKTEMESDPIAENNIARKSDAFTKPTHFNVVSTSSEGEEDEIINTEEQINNNEKVLSEDTKITSVPIVNEGGTIVLVDDKDKKLKLDGIVNIVDESSSEEETLATVKDLSVNKAKQRVNSNVGTSNKRVRLNDKIKEKIIALKKNGLSVRAIAKETGLSIASVDRWWSRYRKNGNTYRKSDTAEADDIDPKPNYCDELVEPGKEMGACSAVVRQRLHEAGFEHILMKKPERNGKIEKIATSKHKALHDDLKERIIALKQEGMTNSRIAYLLDTSRITVRKWWSRWCNEGHMQNGKQTGRKRKTTPEEDQLLIERVTQEQTVHTPSLAMELGVSPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01094117;
- 90% Identity
- iTF_00122470; iTF_00121417; iTF_00121516; iTF_00124241; iTF_00123350; iTF_00123451;
- 80% Identity
- iTF_00122470;