Acre027522.1
Basic Information
- Insect
- Apamea crenata
- Gene Symbol
- -
- Assembly
- GCA_949629185.1
- Location
- OX451374.1:6110652-6112247[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-07 8.6e-05 23.2 0.0 2 34 19 51 18 58 0.90
Sequence Information
- Coding Sequence
- ATGCCAAGAACATACACGAAGCGTTTAGGCGCTCGCGCCTATCGAAATTATAATGAAGACGTGTTAGAACGAGCAGTAGTTGCAGTTGTAGAAGGTCGTATGACCTTACGTGGGGCTTCAGAGAAATTTAAAATACCGTATGGTACGATTTTCAACAAATACCACGGCAAATTTATAAAAAAGCCGGGTGCTCAGACAGTATTTTCTGAAAATGAAGAGAAATCTATATTGAAAGCTTGTGCCAAATGTTCTGAGTGGGGATATCCCCTTACAATCTTAGATTTGCGCATGTTTGCTAAAATTCTTTTAGACAGACAAGGCAGAACAGTTTCTAAATTTAATAACAACCTTCCTGGACAAGACTGGGCATACTCGCTACTGAAACGACACAAAAACGAATATTCTAAACGGGTTGCTACTAACATCAAACGAGCTCGAGCCGCAGTATCCCCTGAAAGTATCGAGGAATATTTCAACAACCTTGAAAGAACTGTGGAAGGTGTGCCTGACTCAAATATTTTCAATTACGACGAGTCTAACTTAAGTGATGATCCAGGGAAGAAGATAGGGATATATCGTAGAGGTGTCAAATACCCGGAAAAGGCGATGAATTTTTCTAAGAGTGCTACATCGATAATGATATGTGGGTCTGCTGATGGGGTGCTTTTACCACCCTATATCATATATAAAAGTCTACACCTTTATGACACGTGGAAAGAAAGAGCTCCATGCGGTCCACCAAATTGCAATCAGCCTTGTTGCTCAGTAGGATCACGATTTAACCGTACAGTCAGTGGTTGGATGGACGCCCCAACATTCAGAGATTGgtttgtaagtagttttttgCCTCATGCAAAAAGATTGCCCGGACGTAAAGTTCTTATTGGTGATAATCTTTCTTCTCATTTAGATGAAGAGGTCATAAAACTTTGTGGTGAAAATAACATTGATTTTGTAGGTTTAGTGCCACATTCGACGCACATATGCCAACCTCTGGATGTGGCGTTCTTCCGCCCAATGAAAACAGCCTGGCGCCAAGTGCTGACAAATTGGAAAATGCGAAATGCTAAATTGGCAACTGTTCCTAAGGATACATTCCCGTTTCTTTTGACAAAAGCTCTCGAAAAAATGGATCAAGCTCAACCAAAACCAAATTCTCCTTTTAAAGACATAAGCTCCGGGGTCAAACGTAATATCGTGAGCGGATTTTGTGCAACTGGCATTTATCCTTTCAACAAACAAAAGGTTCTTAATCGCCTTCCAAGAGAACACATTGAAGAACACGAAGTTGAAAGCACTTTGACAGATTTCTTGAAGGAATCAAGATATGGAAGCACTTCAAACCAACCTGCAAGAAGAAAGAGACGTTTGGATGTAGCTCCTGGAAAAAGTATTGCAACGAGAGAGGAAGCGTCCCAATCTGAAAATCAGCAAAGTAATGACCAGAACGCCTCAGATTCCAATCATCAAGAATTAGAAATTCAAGCATTGGTTGAATCGGGTTCATCTCAAGCCGGAGCTGCAGGTGTACACAGTGAGGAAATCCCGGATAGACAACTGATTGAAAATGACCCTGACGAAGATATAAtagaataa
- Protein Sequence
- MPRTYTKRLGARAYRNYNEDVLERAVVAVVEGRMTLRGASEKFKIPYGTIFNKYHGKFIKKPGAQTVFSENEEKSILKACAKCSEWGYPLTILDLRMFAKILLDRQGRTVSKFNNNLPGQDWAYSLLKRHKNEYSKRVATNIKRARAAVSPESIEEYFNNLERTVEGVPDSNIFNYDESNLSDDPGKKIGIYRRGVKYPEKAMNFSKSATSIMICGSADGVLLPPYIIYKSLHLYDTWKERAPCGPPNCNQPCCSVGSRFNRTVSGWMDAPTFRDWFVSSFLPHAKRLPGRKVLIGDNLSSHLDEEVIKLCGENNIDFVGLVPHSTHICQPLDVAFFRPMKTAWRQVLTNWKMRNAKLATVPKDTFPFLLTKALEKMDQAQPKPNSPFKDISSGVKRNIVSGFCATGIYPFNKQKVLNRLPREHIEEHEVESTLTDFLKESRYGSTSNQPARRKRRLDVAPGKSIATREEASQSENQQSNDQNASDSNHQELEIQALVESGSSQAGAAGVHSEEIPDRQLIENDPDEDIIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00445083;
- 90% Identity
- iTF_00043424; iTF_00172842; iTF_00036625; iTF_00622773; iTF_01166617; iTF_00036630; iTF_01166618; iTF_00172853; iTF_00445083;
- 80% Identity
- -