Acre026994.1
Basic Information
- Insect
- Apamea crenata
- Gene Symbol
- Jrkl
- Assembly
- GCA_949629185.1
- Location
- OX451373.1:15486267-15487253[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-10 1.2e-07 32.3 0.0 2 41 16 55 15 58 0.80
Sequence Information
- Coding Sequence
- ATGCCAAGAAATCGTCAAAGGACCACCGCTAAAGCGGCTTGGACCGAAGAAGACCTTCTGTCTGCTAAAACTGCGATTGAAGGAGGTATGTCCAAAAGGAAAGCCGcaaaacaatataacattcCATTTACTACCTTGAGAGATCgattaaaaaatgaaaacatgaACAACCCAAGACTTGGTCGCAAGCCCGTTTTCACCCAACAGCAAGAAACTGAAATTGCTGAACAAGTTAAGTTGCTGGGTTCGCTATACTATGGACTTAATGTCTCAGATTTGCGTAAACTTGTTTATAAATACGCTGAGCTCAACAAtatcaaaaacaattttgatCAAAGCAGCAAAACAGCTGGATTGGACTGGGTTCACGCTTTTATGAGACGCAATCCTTCAGTTTCTATACGCAAAGCTGAAGCGACAAGCTTAAATAGAATTTCTGCTTTTAATAAAGAAGAAATAACACATTTCTATGACAAACTTGGTGACTTAATGGAAAAACATAAGTTTATTCCCAACAACATTTACAATGCTGACGAAACTGGCATAACCACGGTAACAGACCCAGGTAAAGTGCTTGCCGAAAAAGGACAAAGAAGAGTCGGATCTGTTACAAGCGGCGAACGAGGAAGCAACATAACAGTCATGTGTGCGATGAGTGCAGCCGGAAACTTCATACCgcctatgtttatttttgctaGACAGAGAATGACGCCTTTATTAGAAAAAGATGGACCGGCTAGTGCATTATACACCAACTCTAAAAATGGCTGGATAAACGAAGATTTATTTGTCACTTGGCTCAAACATTTCGCAGCATTTACCAAACCTACCCAAGACTCACCTGTGTTATTAATTCTGGATAATCACAGCAGTCACATTTCCCTTCaagcttttattatttgcaAAGAAAACCACATCACAATGCTTTCcattaatatttcttatttaaatgTATCTTACTTGTTATATTCGAAAAAAACATGTTAG
- Protein Sequence
- MPRNRQRTTAKAAWTEEDLLSAKTAIEGGMSKRKAAKQYNIPFTTLRDRLKNENMNNPRLGRKPVFTQQQETEIAEQVKLLGSLYYGLNVSDLRKLVYKYAELNNIKNNFDQSSKTAGLDWVHAFMRRNPSVSIRKAEATSLNRISAFNKEEITHFYDKLGDLMEKHKFIPNNIYNADETGITTVTDPGKVLAEKGQRRVGSVTSGERGSNITVMCAMSAAGNFIPPMFIFARQRMTPLLEKDGPASALYTNSKNGWINEDLFVTWLKHFAAFTKPTQDSPVLLILDNHSSHISLQAFIICKENHITMLSINISYLNVSYLLYSKKTC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00114045;
- 90% Identity
- iTF_00443916; iTF_00443915; iTF_00443924; iTF_00147277; iTF_00726289; iTF_00443925; iTF_01516506; iTF_00432064;
- 80% Identity
- iTF_00122309;