Acre016545.1
Basic Information
- Insect
- Apamea crenata
- Gene Symbol
- -
- Assembly
- GCA_949629185.1
- Location
- OX451362.1:16609366-16618725[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-11 9.5e-09 35.8 0.0 1 37 8 44 8 48 0.93
Sequence Information
- Coding Sequence
- ATGCCAAAGATACCGCAATATACCAAAGAACAATTAGACAAAGCTTTAGAAGACGTTACTCAAGGTATATCAGTTCGTACAGCAGCCAAAAAATATGGGATACCTAGAGCAACACTACAATTTAAATTGAAACACCCGAATAGCAAGAGTGAATTTGGACCAGAACCCTACTTGACTAGAGAAGAAGAAAAACAGTTAGAAGAATGGCTGTGCGATATGGGCAAAAGAGGGTTTCCTAGAAATGCCGAAGATGTTCTAGATTCTGTTCAAAactttctgaataaaaaccccAGAGAGACTCCATTCAGCGAAAATAGACCTGGAAAAGGATGGTTAAAAGGTTTTCTGAAACGCCATTCTAGAATAACTAAAAGAACGTGTGAAGCTGTTACGCAGGCGAGCGCATGTGTATCCGAATCTGACATCAGAAACTGGTTTGGTCAAATCATGGATCAGATAAACAAGTCTAATTTAACCCACATTTTAGATGAGCCTTCCAGAATTTTTAATGCTGATGAAAGCGGTTTTCAGACCTGTCCATCTACCGGAAAAGTCTTTGCTGAAAAAGGAGAGAAGAATGTTTACATTATCGATAAAGGAAAAGCCAAAGAAAATATGACAGTACTTTTTACAATATCTGCTGATGGACAGATGGTGTTGCCTACGATTGTGTACCCCTATCAACGTTTACCTGAGAGAATCAAACAAACTGTACCTGATGACTGGGGTGTAGCAACTAGCAGTTCAGGATGGATGACTGCGgatacatttaaatatattatcgaGCATGTTTTTCACCCTTTTttagtgagaaataacattcaGCTACcagttttgttgtttgttgacGGACACAAATCTCATTTAACCTACGACCTAAGTGTACTAGCTCGCTCTCTTCAAATAGAAATATTTGCTCTGTATCCAAACGCCACTAGGATTCTTCAGCCAGCTGATGTGTCACTATTTAGACCCGTAAAACAGTTCTGGAAATCGGCCGTTAGAGAATGGTTGCTTGAGAACATTGGTGAAGTTGTTTCTAAGCAAAATTTTGCTTTCGTTCTAAGAAAAGTTACAGAAAAAATTAGTTCTGCCTGCATTGTAAATGGCTTTCGAGCTTGCGGTCTCTACCCTTTTGATCCAAATGCTGTCGATTATTCTAAATGCTTAGCGAAGTCAGCATCCAGATCTGAAGACACTGTAGACATTTTAAATGATGAACCCGAAAAATTACTAtcattgacaaaattttcggaaatcgtaGGTGTAGAGATGATTAACAaatttaaagatattaaaaatataatgcaagATGTCCAAAACAACGAATCATTTTTCACTCTTTATCAAATATGGAATTTTTATCATTCGAATGCGGAAAATACGATAGAGAATACTAATGAAAATATAACAGAGAATACTAATGAAAGTGAGGAAGGAGAATACAATGACATGGAACCAGAACCGACAATTGCACAAGAAGAAAACTTTAACACAACAATTATAACTAACAATATTTCTGAAAACGAAAGTCAAAATATAATCATAGCAACACACCAAAGCCTTGAAATAATCCAGGATGCACAAAATAGCGCGAGAAATGACGACCAGACCTGTGAATATGAAAACTTTCCTCACTCTGACAAAGAACCCTTTACCATTCAACCTTCAAATAATGAACAAATCAACATTACTAGTGATTTACAGAATAACGACCAAGAACTTGTAACATTAGGAGACCTAGGAATAGCAAATGCAGAAAACTATGAAAGAAACCTACCATCCTGTTCAACAACAAGACTCAAAGATTTTTTATCAATACCTCCAGGACCAACCAGAAAAGGGAAACGTAACACTGAGAGGCTCCCTTACCACATATCAGGACCAGAATACCAAAAGATTTTAGAAGAAAAATCCAAAGAAAAGAATAGACTAGAGGAAGAAAAGAAGGCAAAGAAAGTTGCGAGAGagcaaaaaaaagaagaaagaaagaggaAACTAGAGGAAATAAAGACCAAAAAGTTGGAAAAGACTAGAAAAATTGAGTCAATTTCTTGCTGTGAGAACAAGGTTTTGACTGCATTGTCATTCTATGCCACAGGGTCTTATCAAAGACACAATTGGAGATATAGCTGGACATCAGAGGAAAGGAGTTCCATAAGAAAAGAGTTTTATCAACAATTTAGAATCCCAGGAATTTTGGGTTGCATCGACTGCACGCAAATCGCCATCATAAGACCCGATGAGCATGAAGAAAGATATTTTTGTAGAAAACACTATCATTCCTTAAATGTTCAACTGaTAGGTGATGCTAATATGTACATCACAAGTGTTGATGCCAGCTACGGTGGAGCTTCGCACGACTCTTTCATCTGGAATCAACATCCAATTAAGGGTCGGTTCATATCTAACGGAATATGCGTCGCGTATTATCGGTCGCGTAACGCCAGAACTGACAAATGTATAGAAAAACACTCGACCGTTCACACTCAACCGGTGATACGTTAG
- Protein Sequence
- MPKIPQYTKEQLDKALEDVTQGISVRTAAKKYGIPRATLQFKLKHPNSKSEFGPEPYLTREEEKQLEEWLCDMGKRGFPRNAEDVLDSVQNFLNKNPRETPFSENRPGKGWLKGFLKRHSRITKRTCEAVTQASACVSESDIRNWFGQIMDQINKSNLTHILDEPSRIFNADESGFQTCPSTGKVFAEKGEKNVYIIDKGKAKENMTVLFTISADGQMVLPTIVYPYQRLPERIKQTVPDDWGVATSSSGWMTADTFKYIIEHVFHPFLVRNNIQLPVLLFVDGHKSHLTYDLSVLARSLQIEIFALYPNATRILQPADVSLFRPVKQFWKSAVREWLLENIGEVVSKQNFAFVLRKVTEKISSACIVNGFRACGLYPFDPNAVDYSKCLAKSASRSEDTVDILNDEPEKLLSLTKFSEIVGVEMINKFKDIKNIMQDVQNNESFFTLYQIWNFYHSNAENTIENTNENITENTNESEEGEYNDMEPEPTIAQEENFNTTIITNNISENESQNIIIATHQSLEIIQDAQNSARNDDQTCEYENFPHSDKEPFTIQPSNNEQINITSDLQNNDQELVTLGDLGIANAENYERNLPSCSTTRLKDFLSIPPGPTRKGKRNTERLPYHISGPEYQKILEEKSKEKNRLEEEKKAKKVAREQKKEERKRKLEEIKTKKLEKTRKIESISCCENKVLTALSFYATGSYQRHNWRYSWTSEERSSIRKEFYQQFRIPGILGCIDCTQIAIIRPDEHEERYFCRKHYHSLNVQLIGDANMYITSVDASYGGASHDSFIWNQHPIKGRFISNGICVAYYRSRNARTDKCIEKHSTVHTQPVIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00809991; iTF_01221441; iTF_01332481; iTF_00850564; iTF_00850566; iTF_00850567; iTF_00850602; iTF_00041710; iTF_01525872; iTF_00041716; iTF_01332479; iTF_01221440; iTF_01332480; iTF_01526981; iTF_00906985; iTF_00120431; iTF_00120432; iTF_00120433; iTF_00120434; iTF_00120435; iTF_00120436; iTF_00120437; iTF_00120438; iTF_01030128; iTF_00038641; iTF_00042553; iTF_01156305; iTF_01156307; iTF_00237403;
- 90% Identity
- iTF_01030128;
- 80% Identity
- -