Acre027419.1
Basic Information
- Insect
- Apamea crenata
- Gene Symbol
- -
- Assembly
- GCA_949629185.1
- Location
- OX451374.1:5585701-5587671[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.2e-14 1.9e-11 44.5 0.0 1 41 15 55 15 57 0.96
Sequence Information
- Coding Sequence
- ATGCCAAGTACGTACAAACGGACGTCACAGCAACAGACATGGGATCCGGATGCGATGGAAAAAGCTATAAGAGCTGTGCGAAACGAAGAAATGGGCTTCCTCAAGGCTAGCAAAGAATTCAAAGTTCCTCGATCGACGCTCAAAAGACGTGTAAAAGGAATAAACAAAGAagctattgaaaataaaaaaatattggggtCTTGCCGCCCAACTTTTAGTATGGAGCAAGAAGAAGAATTGGTGCATCACATTTTAGAAATGGAAAAGCGATTTTACGGATTAACTTTACAGGATGTACGGAGACTGGCCTATCAGTTGGCTGAACGCAATAATATAGAACACAAGTTTAATAAAGATACTCAAATGGCTGGAAAAGCATGGATTTCTGCTTTTAGAAAACGTCATCCGGAACTGACATTAAGAAGCCCAGAAGCAACCTCTCTTGCTCGAGCACAGGGCTTTAATAAAGTAAGTGTCATGAAATTTTTTGACCTACTGGAAGAGGTAAGGTCTAAAACAAACTACCCACCTCATCGTATTTTTAATGTGGATGAGTCTGGTTTTACGACAGTGCAGAGCAAAAGCTCTAAAATATTAGCGCAAAAGGGTAAGAAGCAGGTGGGTGCTATCACCTCAGCAGAGCGGGGTGTATTAAGCACCGTTGTAATTTGTATGGCGGCTGGTGGAAACTTTATTCCCccgtttattatttttccccGAAAAAGAATGAAGGTGGAACTTCAAGATGGGGCACCACCAGGCACAGGATTTGCTTGTCATTCGTCAGGGTGGATGCAATTGgacatttttacagattggTTTAAACATTTCCTCAAATTCGCCAAGCCGACTGAAGATGATCCAGCTCTCCTGATTCTTGATGGACATAATACACACACCAAAAATTTGGATTTTATTGAATTGGCAAGAATAAATCACACCACAGTCTTATGTTTGCCGCCACACTGCAGTCACAGGCTTCAACCACTGGATGTGTCTTTCATGGGGCCTGTGAATAAATATTACATCCGTGCAGTTGAGAAGTATCTTCGCAATAACCCAGGAAGAGCAATAACTGTATTCCAATTCAGCAAACTCTTTGGCGAAGCCTACAGTGAGGCAGCCCAACAGTCTATTGCAGTCAATGGTTTTCGAAAATGTGGAATAGAGCCAATAGACCGCCACGTCTTCAAAGACCATGACTTTTTGGCTGCAGATACAACAGATGTGGCACATGCTGAACCAGTAACACAACAAAATGAGGCCAACAAAGAGAATGAGACACCTGAAAGAGAAGAGTCTCCATCAGTTCTACAGGATGCCCTGGAGGAAATACTAGCAATGACACCACCATTGTTGGATTCGCAAGCAGGCACATTAATGTCGCCAATGGTTGATCCACAACCAAGCACAATAACGTCGCCAATGTTATATTCACCACCAAGCACAATAATGTCGCCAATGTTAGATGCACAACCAAGCACAATAATGTCGCCAATGTTAAATGCACAACCAAACACAATATCGTCGCCAATGTTAGATCCACAACCAAGCACATCATTCGCAGTAACGCCTAGAGACTTGTTTCCGATTCCCAAGGCattacctaaaacaaaaaaaataaacagaaagaGGGGTCGTACAGCAATTTTAACTAGCAGTCCATATAAACAAGAATTACAAGAAGAAAAAACACTACAAGAACAAAAGAAGGCACCAAAGAGAGTTTCTAAACTTACTATTGTTCCAAAGAAAAGtgcaaaaaaatctaaaactaaaattaagaaATGCACTAAAACTGATGATGATATGGATGATGACCCTGATTGTTTTTACTGCGGGGAAGTTTGGTCTAAGTCAAAACATGATGATGGCTGGATACAGTGTTCTATTTGTAAACGATGGGCCCATGAAGCCTGCTCGGGCTGTGATGACGAAGATAATGACTTTCTTTGCGAATTTTGTGCTTAA
- Protein Sequence
- MPSTYKRTSQQQTWDPDAMEKAIRAVRNEEMGFLKASKEFKVPRSTLKRRVKGINKEAIENKKILGSCRPTFSMEQEEELVHHILEMEKRFYGLTLQDVRRLAYQLAERNNIEHKFNKDTQMAGKAWISAFRKRHPELTLRSPEATSLARAQGFNKVSVMKFFDLLEEVRSKTNYPPHRIFNVDESGFTTVQSKSSKILAQKGKKQVGAITSAERGVLSTVVICMAAGGNFIPPFIIFPRKRMKVELQDGAPPGTGFACHSSGWMQLDIFTDWFKHFLKFAKPTEDDPALLILDGHNTHTKNLDFIELARINHTTVLCLPPHCSHRLQPLDVSFMGPVNKYYIRAVEKYLRNNPGRAITVFQFSKLFGEAYSEAAQQSIAVNGFRKCGIEPIDRHVFKDHDFLAADTTDVAHAEPVTQQNEANKENETPEREESPSVLQDALEEILAMTPPLLDSQAGTLMSPMVDPQPSTITSPMLYSPPSTIMSPMLDAQPSTIMSPMLNAQPNTISSPMLDPQPSTSFAVTPRDLFPIPKALPKTKKINRKRGRTAILTSSPYKQELQEEKTLQEQKKAPKRVSKLTIVPKKSAKKSKTKIKKCTKTDDDMDDDPDCFYCGEVWSKSKHDDGWIQCSICKRWAHEACSGCDDEDNDFLCEFCA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00709130;
- 90% Identity
- iTF_01029143;
- 80% Identity
- -