Basic Information

Insect: Apamea anceps
Gene Symbol: -
Assembly: GCA_951799955.1
Location: OX637529.1:3469355-3486829[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0035 0.3 12.5 0.5 1 23 328 351 328 351 0.92

2 12 0.0069 0.59 11.5 0.2 2 21 389 408 388 409 0.93

3 12 3.8 3.2e+02 2.9 1.3 1 13 716 728 716 735 0.76

4 12 1 87 4.7 4.2 1 23 748 770 748 770 0.96

5 12 0.55 46 5.6 0.2 2 23 776 797 775 797 0.91

6 12 0.62 53 5.4 1.6 1 19 820 837 820 841 0.72

7 12 0.0017 0.14 13.5 0.2 2 23 918 939 917 939 0.97

8 12 5.9e-07 5e-05 24.3 2.7 1 23 945 967 945 967 0.99

9 12 2.1e-05 0.0018 19.5 0.3 2 23 973 994 972 994 0.96

10 12 0.0035 0.3 12.5 1.8 2 23 1001 1023 1000 1023 0.96

11 12 0.025 2.1 9.8 0.1 1 20 1030 1049 1030 1050 0.95

12 12 0.00086 0.073 14.4 2.5 3 23 1062 1082 1061 1083 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0035	0.3	12.5	0.5	1	23	328	351	328	351	0.92
2	12	0.0069	0.59	11.5	0.2	2	21	389	408	388	409	0.93
3	12	3.8	3.2e+02	2.9	1.3	1	13	716	728	716	735	0.76
4	12	1	87	4.7	4.2	1	23	748	770	748	770	0.96
5	12	0.55	46	5.6	0.2	2	23	776	797	775	797	0.91
6	12	0.62	53	5.4	1.6	1	19	820	837	820	841	0.72
7	12	0.0017	0.14	13.5	0.2	2	23	918	939	917	939	0.97
8	12	5.9e-07	5e-05	24.3	2.7	1	23	945	967	945	967	0.99
9	12	2.1e-05	0.0018	19.5	0.3	2	23	973	994	972	994	0.96
10	12	0.0035	0.3	12.5	1.8	2	23	1001	1023	1000	1023	0.96
11	12	0.025	2.1	9.8	0.1	1	20	1030	1049	1030	1050	0.95
12	12	0.00086	0.073	14.4	2.5	3	23	1062	1082	1061	1083	0.95

Sequence Information

Coding Sequence: ATGTTGCGCGCTTGCAGCGGGCACCGCCGCCGTCCCTCACCCCTctcgccgcgcgcgcccgcgcaacGGGAGAACTATCCCTTCGCTCTTTCAGTAGCTAAATTAACGGTTCCAGAGCCGAAACTACCTAAAACCATAAAACAACCCACAAACAGAAAACCAACAAAAAAGGTGATAGTAACACCACCAGAGCCAACCTTCTCAAAACCAGAAGAGGTCGACACGAGCGTCCTGAGAAAAATTAACGCGGCAGCTAGGGAAGGTAATAAGTCACAAACCAGGATATCGCCAAGAAAATTCGAGATTAACATTGAAGTAGAATCatgtgatgatgacgatgaatttGAAGGACTTGTTGACGAAAATCGTTTATCACCGCATGTTAAAGAAACGACAAAAGCAAGGGCCGAACCTATTGAACTTTCTCGAGAAATCATTCTCGATGCTGCCGACAATATACTCGAAGATTCAACAAATATTGCTGATAAAATTCTAAATATATGTGTTAGGAACACGATAGGGTATGAGGAGAAGACGAAACTGGTGTTAGACTGTCATGAGAAGCGAATACAACAGACCTTAGATGAATGGCGTACGTGGCAGTTCCGTAGTTTCCACAGAGAAGAACCTCTATTCTACAAATGCTACATCTGCACGAGGTCCTGGTGGCATTTAACAGACTTCCGCAACCATTTGTCTACAAAACACCCTGGTGATTTATTGGTTATAATAGCTttggaaaaatatgaaatgCATGAAGCCAATTTGATAGCGTACCACCAAAGGCTTGTTGTGATAAAAGATATATATACAGAAGGACTTTGCTACCGATGCGGTAAGGATTATGGTGCTCATGAGTTAGAATTGAGGTTCCAGGAGAAATATTACAAAACGGAAGGTTGCACAAAACAGTTTTTTAGCTGTATGGGTCTAAGAGACCATTTTGCTAGCTGTCCTGTCTGTAAAAAAGACGGTAAACTGTTCAAATGTGATATATGTAAGTCAACATTTAATACAGATGAGGAGTTAAACAGTCATTTAGTGTTGTCTCATTCCGTTCGGTCTGATATACCGATAATGTCTCACTATAAGAACTGCAGACGCTGTTCGGAGAGGTTTTCCTgtcaatatttacataaatgcgGACAAAAGGCACCCCATAGCGAGTGTTCTCACTGTCCACTGAGCTTCTCAAATGTCATGTCTTTGGAAATACATTTGTCACGGTCAAATATGCCTTACAAATGTGAAGTCTGCCGAGAGGTGATGGAGTATAGCTGTAAAAAGTATGAACATATGTTGAAACACACGGACAAGTATATGGTAGTAAGGAAATGTGTGACGTGTGAGGGTTTGAAGGTTTTTTTGAATAAAGAAGATGCAATGGCACATCGGTTGTTAAAACATGAGGTCAAAGAAACAAGAAGTCAGAGCTATTTTCCTAAAATTTTGGTACCGTCATCCTGTGTTTATGAAAGTTTAGCAGAATCAGAATGGAATGAACAAGAATCCGCATTGGAAGAACAAGAATTGTTACTGGAAGACCAAGAATCAGAACAGGAAGAAAAAGAATTGGTCCTGGAAGAACAAGAATTAGTACTGGAAGGAACAGAATCCATACCTGAAGAAGAAGAATCCGTACCGGAAGAAGAATCAGTATTAAAAAGTGAAAGAGAATCTGTTTCAGTATGTGAGCAGAAATTGTTACAAGCAGAGCTAGAATCAGCCACAGAATTTATGTTGGGAACTGTTGTTGTCAAAcAAGAACCAGAAGACTCAGAAGACAGCCCAAGACTTGTTATCAAAGAAGAACCATTCGAAGAATTTGAAAAACAAACGCATGAAGAAGAGAATCCTACCGAGAATTTTGAACACGAAATAAGTGTCAAAGAAGAATACATAGAAGAAGAATACATGGAGGTAGAAGAATATGAAGAAGATATCATCAAACTGAACTTCAATATAGAAGACTTATTAGTAAAACAAGAATCAATTCAAGCAGATGACGATTATAGTGTAGAACAGACGGGGACCCAAGAATCAGAAAATGATGAGTCAGAAGAATTTccacaaaaattgaaaaaagattCCATGCTAGAACCAGAAGTTATTATAGATGGGGAtgatagaaaaaacaaaaaactatacAGATGTACTACATGTGGATTTACAGCGAAGCATAAACAATATAGAAATCACGTAGACTACGACTGCGGCACCAGTCCAATCAAACATAAAACCTACACGTgcacaaaatgtcaaaataaatttgtgtctatgaaaaaatatttgacacatTTCAAGGAGCATGGTTATAAACACCTCTCCTGTCCTGATTGCCTGAAAGAATTTGACACATACACTATTCTAGGGCAGCATCTACAACAGCACATCAAACAGAATTTTGTCCGAGTAAAAATGATCACGCACGCAGGCAAGGCTATGACAAAACCTGACTATCAATGCAAAAAATGCGGAAAAATCATAGTTTCTCATTATTTCTTTGAACATTGGGAACTGCATATAAATGCCCAGCCTACGCATCCTATAAAAGTGACTTCGAGGCCGAAGCATAAGCATGGAGAGTTGCATGAAACTATTATCAAGGAGTGTATTGcCCGCTTGTACAAACAGCCAAAGGAGTGCAACCATTGTCACCGTTGGTTCAAACGGGTCAACGAATGCAAGCGCCACATTATAGAACATCTATTAAATGATGCATACAACCAGAAACGCATCTACAAAGAGCTCAAATGCCAAGTCTGTGAACAAGGATTCGCTGTAccagaaaaatataaacaacatATGCGGGACCACGCGTCCCTACCTGTGTACAAGTGTGAACTGTGTGATCGCACCTTTAGTGACTCAAGCAACTTTACAAAGCATAAAAAAGTGCATAATTTGAAAGTGATTGTCTGTGATTTGTGCGGTAAAAAGTTTCAATCGAAAGTGTCTTTGGAGAAACATATTGAGAAACACATGGGCTCAGAGCCGATTACCTGCAAGATCTGCAACAAAATCTTCTACTTCGATACATCTTACCGTCGCCATGTAAGGTACTTCCACGAGAAACCCGCCATTGGCTACAAGTGCGTTATCTGCGGTGAACGCTTCGAAAGTCTTAAACTTAAATGGAACCATATGTGGGAGGTACATAACGAAAGGAAACAGAAAGCGGACTGTCCTATCTGTCATCAGTCCTTCAGGAAGTACTCCGATGTCCGTCTCCATGCAAGAGTACACCATATGACGGAGGTTTCAGTGTTAAACGTCAAAAAACATGCTTCGAAGTCAAATATAGATATTGATAAGTACTTAGGGGATCCTGCTAAGATCAAAGCTGGGAGGATGGAGACTTTGGTTGTGTATGATTCTGATTGA
Protein Sequence: MLRACSGHRRRPSPLSPRAPAQRENYPFALSVAKLTVPEPKLPKTIKQPTNRKPTKKVIVTPPEPTFSKPEEVDTSVLRKINAAAREGNKSQTRISPRKFEINIEVESCDDDDEFEGLVDENRLSPHVKETTKARAEPIELSREIILDAADNILEDSTNIADKILNICVRNTIGYEEKTKLVLDCHEKRIQQTLDEWRTWQFRSFHREEPLFYKCYICTRSWWHLTDFRNHLSTKHPGDLLVIIALEKYEMHEANLIAYHQRLVVIKDIYTEGLCYRCGKDYGAHELELRFQEKYYKTEGCTKQFFSCMGLRDHFASCPVCKKDGKLFKCDICKSTFNTDEELNSHLVLSHSVRSDIPIMSHYKNCRRCSERFSCQYLHKCGQKAPHSECSHCPLSFSNVMSLEIHLSRSNMPYKCEVCREVMEYSCKKYEHMLKHTDKYMVVRKCVTCEGLKVFLNKEDAMAHRLLKHEVKETRSQSYFPKILVPSSCVYESLAESEWNEQESALEEQELLLEDQESEQEEKELVLEEQELVLEGTESIPEEEESVPEEESVLKSERESVSVCEQKLLQAELESATEFMLGTVVVKQEPEDSEDSPRLVIKEEPFEEFEKQTHEEENPTENFEHEISVKEEYIEEEYMEVEEYEEDIIKLNFNIEDLLVKQESIQADDDYSVEQTGTQESENDESEEFPQKLKKDSMLEPEVIIDGDDRKNKKLYRCTTCGFTAKHKQYRNHVDYDCGTSPIKHKTYTCTKCQNKFVSMKKYLTHFKEHGYKHLSCPDCLKEFDTYTILGQHLQQHIKQNFVRVKMITHAGKAMTKPDYQCKKCGKIIVSHYFFEHWELHINAQPTHPIKVTSRPKHKHGELHETIIKECIARLYKQPKECNHCHRWFKRVNECKRHIIEHLLNDAYNQKRIYKELKCQVCEQGFAVPEKYKQHMRDHASLPVYKCELCDRTFSDSSNFTKHKKVHNLKVIVCDLCGKKFQSKVSLEKHIEKHMGSEPITCKICNKIFYFDTSYRRHVRYFHEKPAIGYKCVICGERFESLKLKWNHMWEVHNERKQKADCPICHQSFRKYSDVRLHARVHHMTEVSVLNVKKHASKSNIDIDKYLGDPAKIKAGRMETLVVYDSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01093596;
90% Identity: iTF_00124725;
80% Identity: -