Basic Information

Insect: Apamea anceps
Gene Symbol: clz9
Assembly: GCA_951799955.1
Location: OX637523.1:4028342-4031209[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.5e-08 6.6e-06 26.6 0.0 1 40 14 53 14 58 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.5e-08	6.6e-06	26.6	0.0	1	40	14	53	14	58	0.91

Sequence Information

Coding Sequence: ATGCCGCGAACTTatataagaaagaaaattaaatcatacACTCCACAAGATTTATCTCAAGCGATCGCAAAGGTAAAAAATGGAGAACTTACAAAATATAGAGCAGCGCAACATTATAAGATTCCCATGACGACTCTTCATGAACATTTAGAAAAAGGCAAAGAAACTATTAGACCAAATGCAGGTAGGCCAACTGTTATAGACCCagaagatgaaaaaaaattagcaGAAACTGTGAGAATCATGGAAAAATGGGGATATGGCCTAACTAGGTTTGAAATTATGGAGCTTGTCGCTGAATATGTGCGggtgaataaaattaaaacaccttttaaaaataatgtcccAGGCACAGATTGGTTCATTAATTTCCGGAAACGACATCGGTTATCAATTAAAAAAGCACAGCCTGTAGAATTTGTAAGAAGAAAAATGACAGATCCATTCGTCATTGGTGAATATTTCGATTTGCTGGAAAATACTCTAAAAGATTTGGATCTTTTTGAAAGTCCCCAATTCATTTGGAACTTAGATGAGACATCGTTATGCCTGGATCCATCCAGAACAAAAGTAGTTGgacaaataaacaaaccttGTGCGAGGACCACCCATGGGAGTGGAAAAGAAAACATCACCGTGTTGACTGGCGTAAGCGCTAGTGGCAAGAAGTTGCCGCCTTTGATTGTATTTAAAGGCAAATTTGTATGGGATCAGTGGATGGCTGAACTGGACGGTGGTGATTACGATTTCGAATTATCGTATGCAGCCAGTACTAAGGGGTGGATGGAATCAGACATTTTCTATAACTATATGGAAAAAGTTCTTATCCCAAGTCTGGGCGAAGAGCGCCCGGTTCTTATTATTTATGATGGTCACTCAACTCACGATGTTAGAGTTGTGGAGCTGGCCATCCGAAACCGTGTCACAATACTTAAACTACCGCCACACACATCACATTTGCTGCAGCCTCTTGATATAGCAGTATTCAAGTCATTCAAGTCAATATGGGATGCGAAGCTGGTAGAGTGGCAGCGTAGAAATGTTGGCACAAAAATGCCAAAAAAAGTTTTCGCTCAAGCGCTGGCAGATACTTGGCAAGAAACAAATCCCGATATAATCAAAAGTGGATTTAGAAAAGCTGGGATTTTCCCTTTTAATTCGCACGTGATACCTGTGGACAAGTATGATCCAGATGCATACAAAAGATTCCAAAAAAAGATATCAGAACCACATTTTGCATCCACAAAACCAACACCCAAAAATCCGAAGTCACTGAAAGAAATTTGTATTGGCTTCTTTAACAATCAACTTCCCACCACTAATGATGCTCTTGAAAATGCAAACACCGATAACGATACCTTACTGTTGCAAGTTTCAAATCCCAGTATCCAAACTTTGAGTTTTGTGGCCAAACGGCCAACCCAACTACCTCCTTGCTTAAAGAAATCGTCAAACACTGATGCGATTACCTCGCTGTCTCAGGTATCGAAATCTGATATCCAGACGTTGAGTTTTGTGGCAAAACAGCCATCCCAACTACCTCCTTGCTTAAAGAAATCATCAAACACTGATGCGATTACCTTGCTGTCTCAGGTATCTAAATCTGATATCCAGACGTTGAGTTTTGTGGCAAAACAGCCATCCCAAATACCTATATGTTTACAGAATTCTAATCAAACACCAActcaaaatttgtcaaaaataaaaataatctcgaACGTTATCATCAAAAAAGCACCTCAACAGTCCCTCCAAGCCCAACCACTATCCGAGCCATCATGCACATTCGAAGAATTGCTTTTAAGAAAAATACAACAGGACAAAAAAGATAATCAACCGACAAAAAAGAAACGTGTCACTAAAGGTGCTGAAGTAATAACTGCAAAAATGGGTAAGAAAATTTTAGAAGAAACGAAAAAAGCTCAAGGTTTGAAAGCGATAGCTAAAAGAACcaataacatttacaaaaaaagatcAACAAGAGTAAAAAAAGAGGAAGATTCTGAAATAACAATACACAGAAAACAACAACAAGAACCACAGCCAGGCCCTTCAGgcataagaaataagaaaaaacGAAAACGGCAGCCTTCACTTGACAGCATAACTAGTGTATCCGACATTATGAGCGAACATAGTGATTCTGATATTGAATGTGTTGATTTAGAAGAATTGACGGATGAATACTCTGAAAATAATAGTCAAATATGTAACGAAGAACTAAGGTCACCAAAAAATACAAATgatgttaaatataataaaaaaaataaaaattgtgataATTTTACCGTCAGAAATATACTCTCTAACAAGAATTCAAACCCTCTCTATAATAAGGGTAAAGGTATGGGCAAAAAAAGCAAAGGTAAAGAAAACAAAGTAGACGAAACAGTCAAAGAAAATGAAATGGAAAGACATGTTGAAAGAAATTTCGAATACGATATTGATATTTttactaaagaaaaaaatatgacaactAGAGAAGACTCTAAAGAAAAAGACAACAATGAACAACTGCTACTTAAACAGGAAAGTAAAGAAATAGTATACGAAACTCAAGAAGAGAACCTAGCTATGAAGGAAAATTACCAATTAAATGATTCAGTACTCGTCAGATATTTGGTAAGAAAAAAATGGAAGTATTATGTGGGGTTCAtagaacaaataataaaaaatgaagaaaatatatACTTCACTataaattttttaaaaaccATAAGACCACAGCAGCGCCTTGCCTTTATAACgaccaaaaaaaaagacattgatGAAGTTCCAGAGTCATTAATAGTGAAGAAgatagatttaaataaaaacgataAAGAATATTACTTATGTAATAACGaggataacatttattttaactgA
Protein Sequence: MPRTYIRKKIKSYTPQDLSQAIAKVKNGELTKYRAAQHYKIPMTTLHEHLEKGKETIRPNAGRPTVIDPEDEKKLAETVRIMEKWGYGLTRFEIMELVAEYVRVNKIKTPFKNNVPGTDWFINFRKRHRLSIKKAQPVEFVRRKMTDPFVIGEYFDLLENTLKDLDLFESPQFIWNLDETSLCLDPSRTKVVGQINKPCARTTHGSGKENITVLTGVSASGKKLPPLIVFKGKFVWDQWMAELDGGDYDFELSYAASTKGWMESDIFYNYMEKVLIPSLGEERPVLIIYDGHSTHDVRVVELAIRNRVTILKLPPHTSHLLQPLDIAVFKSFKSIWDAKLVEWQRRNVGTKMPKKVFAQALADTWQETNPDIIKSGFRKAGIFPFNSHVIPVDKYDPDAYKRFQKKISEPHFASTKPTPKNPKSLKEICIGFFNNQLPTTNDALENANTDNDTLLLQVSNPSIQTLSFVAKRPTQLPPCLKKSSNTDAITSLSQVSKSDIQTLSFVAKQPSQLPPCLKKSSNTDAITLLSQVSKSDIQTLSFVAKQPSQIPICLQNSNQTPTQNLSKIKIISNVIIKKAPQQSLQAQPLSEPSCTFEELLLRKIQQDKKDNQPTKKKRVTKGAEVITAKMGKKILEETKKAQGLKAIAKRTNNIYKKRSTRVKKEEDSEITIHRKQQQEPQPGPSGIRNKKKRKRQPSLDSITSVSDIMSEHSDSDIECVDLEELTDEYSENNSQICNEELRSPKNTNDVKYNKKNKNCDNFTVRNILSNKNSNPLYNKGKGMGKKSKGKENKVDETVKENEMERHVERNFEYDIDIFTKEKNMTTREDSKEKDNNEQLLLKQESKEIVYETQEENLAMKENYQLNDSVLVRYLVRKKWKYYVGFIEQIIKNEENIYFTINFLKTIRPQQRLAFITTKKKDIDEVPESLIVKKIDLNKNDKEYYLCNNEDNIYFN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00038664;
90% Identity: iTF_00122320;
80% Identity: -