Ader004872.1
Basic Information
- Insect
- Anticlea derivata
- Gene Symbol
- -
- Assembly
- GCA_947579855.1
- Location
- OX388265.1:1524697-1539808[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.7 1.4e+02 3.4 0.4 2 23 6 27 5 27 0.96 2 12 3.5 1.7e+02 3.1 0.0 1 23 1115 1137 1115 1137 0.94 3 12 6e-06 0.0003 21.2 0.8 2 23 1140 1161 1139 1161 0.96 4 12 0.00052 0.026 15.1 2.0 1 23 1167 1189 1167 1189 0.98 5 12 0.013 0.67 10.7 4.9 1 23 1195 1217 1195 1218 0.96 6 12 1.5 73 4.3 0.7 5 23 1231 1249 1229 1249 0.97 7 12 0.069 3.4 8.4 2.7 3 23 1256 1277 1255 1277 0.96 8 12 0.0066 0.33 11.6 0.2 2 23 1294 1314 1293 1314 0.97 9 12 6.7e-05 0.0033 17.9 0.7 1 20 1320 1339 1320 1342 0.92 10 12 0.0065 0.32 11.7 2.0 1 23 1350 1372 1350 1372 0.99 11 12 0.007 0.35 11.5 7.2 1 23 1378 1400 1378 1400 0.98 12 12 0.00012 0.0062 17.1 0.4 1 21 1406 1428 1406 1429 0.95
Sequence Information
- Coding Sequence
- ATGGACCAGCTCGTCCAGTGCCCGGTTTGCACGCTCTTCCTGCACAATGGCATGACGCTAGAGTCCCATCTCGACACGCATCCCAAGGATCAAGTGATCAAAGCTCTCTGTAGCATCACCAAAACTAACACCAGCTGTGTCAGCAGCAGAACACCTACTCCTGCCAATTCCGAGAGGTCTTACAGGAGCAGGTCTAGGACACCAATTACTGAGGATAGTAATGGTACTAACCCCTGGAGTGGAAACAAGGAGCATGAAAGATATTGGGCTAGAACGCCTAGCGCATCGAGCAGGACCCCGAGTGGAACCCCGAGTGGGACCTCAAGCCGGGGGGCGAGCCGGACGCCTAGCAGGACTCCCAGCAGAACTGCCAGGTCTCATTCATCAGCCAACTTATCAAGAAATTGCACACCTGATATGAGATTGGTTGATAATATAGCATTTGAAACAACAACAGTGAGTAGCTCATCACAAAACTCGCAATCTCGCCATTCTCACTCACCATCAGTGATAAAATTGGATAAAACTCACCGAACATACCCACCAGCTTCAGTACCAGATTATGATCAACATCAGCAGTATATGGATTACTCTGACCAGCAGGAGGACCGGGAAGTGAAGTATTCCCGAAGCGCAGAGTATAATGCGTTGGATGTCAATAACATGTATTCTTACACAATGCCGATGGCTGGTACAGGTGGTAAAATGCAGTCATTGCCACCACAAGTGTTGCCGCGGAAGAAAAATGAACCGGTCAAGGTTGGAGCTGGTGTGAAGCCAAATAACTTACTCAACCTTGTTAAAAACAACATTGGTGGAATGCAGTGCTTACCTACGTACCTGGGAAACCGTAGTGCACCCTACCCGATTGTGACCAATACCCCCTCATTTGTTCAGAAGAATGTGCAGAATAGTATGGTGATGACCGGTGGGCTGCCCAGCACCCAAGTCCAAATTGAGTCCAAAAATGGACCTCCATTAGTTCAAAGTCATTTCAATCTACCCTCTGGGACTTTCACCCCGGGAACTACAGTCGTCACTCAAAACTCCCAGTACATTTATCAAGAAATGGTGCAAAATATTGACCCTAAATCCTTTGTCCCTACAATGCCACCTGTTTTCACAGGTCATGAGAATATCACTAATGTTGCTCAAAGCTCGGAATGTACAAGATTGTATCAGAATGTGATGCTTGTTGATCAGTATGGTAATACCTCCTGTATGTATACACCCCAGCCGATGTTGCCCAAAGCAACCTGTGCTCCCCCGCTGTTCACAGAGAGTAGTACTCGGCCGGTGAATGCATTTGTGCAGAAACCTGGTCCAATGAAGAAAGATCCAAACAAGACTCTGATCATAGAAGTGGGACCCATCCTACCCCCGCAGCGAGCTAACTCCCGCACCTCCGCTGCAAACACTGTGATACCACAGCCACAACATACCAGATGTGCTATCCCAAATGTTCCTATTATATCCCCTCCTAAACCCGAGGCTCCCAGTATTTCAATAACGGAAAAAGTTGAAAAAACTGAAGTCCCCTGCACAACTAGAGGTCTGAAGATTCTGAGCAACATCAAAGTAGAAGTTCCAGTGCAACACATCAAGAGCATGATAAACACAGTATTGGACCTGACCGGTTCCAACGACGCTGTGTACCCCGATCGGAGCAGGACTCCTGAAAAGATCTTGCCTGATTTAGACGTGGACAGGGCAAGGGGGCCTGATGACTTCGCGCAGCCCTCAACCGCTAGTGGCGATAACTGCCACTTTGAAATTAAGAAGTTCGAAAGTGCTACCTCAAACAAAGACTTGAATAGTAAATCTAATAGCGTAGATAATAAGCTAGAAACTGACTTGGGCGATAGTTGTCCCGTACCGGACCTTATCTGTAACGAGAAACCTTCTATATCCCCGTGCAGTGAGCTCTCTGAAAGCGGCGACAACTCCGTCGACCGCACTTTGACATCTCCCAAGCCTCACTCCAGCGGAGTCATCGTGAGAAAGGAAGTCGACTTCGATAGTAAGAAGAAGGCGCCGACGAAGATAAGACTGAATAACATTTTCGTCAAAAAGAACAAGAAGATTCTGCAAATAAAAAACGCTAGAGCATCCGTGAGCCATTGCGAAATCGCGCCCGTCGCGTGCTCGTCGAAAAGCGTAGCGCCTGAGAATTTCGCCGCCGTGAAGATAGCTCAGTCTCCGCAACGGAACGAGATATCGACGCTCACGACTATTTCAATTGAAGAGATCAGAGAGAAGGAAGAATCTAGCTTCGAAGAGCTGGATCCGGTGGAAGAGGTGAAAATGCCGCCAGCGCCTTCTAAATCCGAGGCCATTCCCGTGAAGGAAGAACTCAGTTGTAGCAACGAGTGCGCGTTCAGTAACGAAGCGCCCGGACCAGCTCGCATTGGGCCTCTCGACCCGCTCAGACCTATCACAGTCAGCTACGGCAGCATGTCTCCGTCAGACTTCGACGACGAGTCCAGCAACCGGGAGCTGTTAGACCTCGAAGGCGGAAAGAACAAGCAATTCGTGAGCATGATGAACGACAATTACTTTGGCGATAACATCTACGCAGATTACTTTACCCCAGATCGGGTGGAAGCCTTCGACGATAAAGGGCCTACTGTCTTCAAGGACAATTCTAAGGAAGCGTTCTCTTGTAACATCTGGGGGGAGCCTTCGTCTAAGGAAAACGAGTTTGTCCTCCCGAATTTTATCCACGAGAGTTATAAGATCGCGGATGATGGGGTGGAGTATGTTGATGGGGGGGAGGTGAGGGGGGACAGCAAAGCGGATGTGCCGCCGCTGAATATATGTGCCGATGAGCGGATGCCGCCGCGGGGAGAGATCAGCGGACAGGAGAGCAACGGCGATATGGACTCCTCTTGGAATGGGATGTATCCTGAAGTGACCCCAGCCGAGCCTTACGATCTAATGGCACGCGAGAGTTGGGTCTCGGACGGGTCGGAACTGGATGCTACAGAGAAGAGAGATACCCTTGAGGAGGAGCTGGTATTCCCCAAGGCGCGGGTGTATGCCTGCCTACCCTGCGGCACTAAGCACCACTCGCTGAAGGAGTTGCGCGCTCACAAGGCGGCCGAGCACGCCACTGCCACGTGCTCCAAGACTACCTACAGCCGACTGCTCACCGCCAGGGCCATCAAGAAGGAGAAGGCTGAAGACTTGACCTGTGCTGCCAACATCCTCGCGATCGACTCTAAGGAGACCATAACGTCGACGATCCTGCAAGTGTACGAGCCGGACGCGATAGAGGCTAAGCCTCAGCTCGGCAATCTGCGCACGATGCTCAAGGGCGAGGGCAAGCGCAAGCGCAGGGACTTCGTCTGTCCTACGTGTAAAGTGGACCAGGTGACGGAACCCGCATTCACAGCTCATCTCAAAATCCACCCCCTGGAATGTCTGACCTGCGGCAAGTTCTTCTCAAGGCGCGCCAATCTGCAGCTGCACGTAAAAACGCATCTCGGCATCAAGGACTATAAGTGTGACATCTGCGAGAAGCGGTTCGTGACGCGGCAGAAGCTCGGCGAGCACCACAACATCCACACGGGCCGTTCGCCCTACAAGTGCACCTTCTGCGACGACACCTTCCGCAGATACTCCAACATGGTGCAGCATCGGGACCGGCACCACCTGCACAAGCGAGCGAAGACCCGCGACTTCGTGTGCCACTGCGGCGCCGTGTTCCAGTCGCGTGCGAAGTACCTGTGGCACAAGGAGACGCACGCGGAGCGGCCGCGCGCCTGCCTCCACTGCAGCGACAAGTTCGTGCACGCGGCCTCGCTCACCCGCCACGTGCGCCGCTCGCACAACGACCTCTACCTGTCGCAGCACACCAGGACCAAGAACGACAACGTCACGTGCCCTATATGCAAGCAGGTATACCTCCGTACGAACCTCCGCGCTCACCTCCTCACGCACAGCGGCAAGCGGCCCTACTCCTGCGTGATCTGCAACAAAGCCTTCACCACCAAATGGAACCTCAAACTGCACCGCTGGACCCACATGAGCCGCTCCGCCAAACCATACAAATGCTCATTATGCAAGGGCGCATTCATCCGACACACCGAGTACGTCTCGCATATGAACTCGCACAAATCCGTCCGGCCTTACACCTGCAACTACTGCGGCTGCCAGTTCATAAGGAAGTACAACTGTCAGCGGCATGTGAGGGAGCATGAGATGGCGAAGAAGTTTGTCTGCAACGTACCAGAGTGTGGCAAGTCCTTCCACCGGAGCTACTATCTGTCGGAGCACATGAAGGGAAATGGTTGCGTCCGAGGCCTAGTGGTGTCTGAACGCCCGCTGTGGGTGTCCGAATGCCAGCTCGGTGTGTTTGAACGCCGGTTGTGGGTGTCAGAACGCCCGCTATGCGTGTCTGAATGCCAGCTGTGGGTGTCTGAACGCCTGCTGTGGGTGCCTGAACGCCATCTGTGGGTGTCAGAACGCCCGCTATGCGTGTCTGAATGCCAGCTGTGGGTGTCTGAACGCCTGCTGTGGGTGTCTGAACGCCATCTGTGGGTGTCTGAACGCCCGCTATGCGTGTCTGAATGCCAGCTGTGGGTGTCTGAACGCCTGCTGTGGGTGTCTGAACGCCATCTGTGGGTGTCTGAACGCCCGCTATGCGTGTCTGAATGCCAGCTGTGGGTGTCTGAACGCCTGCTGTGGGTGTCTGAACGCCCGCTGTGGGTGTCTGAACGCCTACTGTGGGTGTCTGAACGCATTTGCTTGCAATGTTATAGTGTTGGGTAG
- Protein Sequence
- MDQLVQCPVCTLFLHNGMTLESHLDTHPKDQVIKALCSITKTNTSCVSSRTPTPANSERSYRSRSRTPITEDSNGTNPWSGNKEHERYWARTPSASSRTPSGTPSGTSSRGASRTPSRTPSRTARSHSSANLSRNCTPDMRLVDNIAFETTTVSSSSQNSQSRHSHSPSVIKLDKTHRTYPPASVPDYDQHQQYMDYSDQQEDREVKYSRSAEYNALDVNNMYSYTMPMAGTGGKMQSLPPQVLPRKKNEPVKVGAGVKPNNLLNLVKNNIGGMQCLPTYLGNRSAPYPIVTNTPSFVQKNVQNSMVMTGGLPSTQVQIESKNGPPLVQSHFNLPSGTFTPGTTVVTQNSQYIYQEMVQNIDPKSFVPTMPPVFTGHENITNVAQSSECTRLYQNVMLVDQYGNTSCMYTPQPMLPKATCAPPLFTESSTRPVNAFVQKPGPMKKDPNKTLIIEVGPILPPQRANSRTSAANTVIPQPQHTRCAIPNVPIISPPKPEAPSISITEKVEKTEVPCTTRGLKILSNIKVEVPVQHIKSMINTVLDLTGSNDAVYPDRSRTPEKILPDLDVDRARGPDDFAQPSTASGDNCHFEIKKFESATSNKDLNSKSNSVDNKLETDLGDSCPVPDLICNEKPSISPCSELSESGDNSVDRTLTSPKPHSSGVIVRKEVDFDSKKKAPTKIRLNNIFVKKNKKILQIKNARASVSHCEIAPVACSSKSVAPENFAAVKIAQSPQRNEISTLTTISIEEIREKEESSFEELDPVEEVKMPPAPSKSEAIPVKEELSCSNECAFSNEAPGPARIGPLDPLRPITVSYGSMSPSDFDDESSNRELLDLEGGKNKQFVSMMNDNYFGDNIYADYFTPDRVEAFDDKGPTVFKDNSKEAFSCNIWGEPSSKENEFVLPNFIHESYKIADDGVEYVDGGEVRGDSKADVPPLNICADERMPPRGEISGQESNGDMDSSWNGMYPEVTPAEPYDLMARESWVSDGSELDATEKRDTLEEELVFPKARVYACLPCGTKHHSLKELRAHKAAEHATATCSKTTYSRLLTARAIKKEKAEDLTCAANILAIDSKETITSTILQVYEPDAIEAKPQLGNLRTMLKGEGKRKRRDFVCPTCKVDQVTEPAFTAHLKIHPLECLTCGKFFSRRANLQLHVKTHLGIKDYKCDICEKRFVTRQKLGEHHNIHTGRSPYKCTFCDDTFRRYSNMVQHRDRHHLHKRAKTRDFVCHCGAVFQSRAKYLWHKETHAERPRACLHCSDKFVHAASLTRHVRRSHNDLYLSQHTRTKNDNVTCPICKQVYLRTNLRAHLLTHSGKRPYSCVICNKAFTTKWNLKLHRWTHMSRSAKPYKCSLCKGAFIRHTEYVSHMNSHKSVRPYTCNYCGCQFIRKYNCQRHVREHEMAKKFVCNVPECGKSFHRSYYLSEHMKGNGCVRGLVVSERPLWVSECQLGVFERRLWVSERPLCVSECQLWVSERLLWVPERHLWVSERPLCVSECQLWVSERLLWVSERHLWVSERPLCVSECQLWVSERLLWVSERHLWVSERPLCVSECQLWVSERLLWVSERPLWVSERLLWVSERICLQCYSVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00267528;
- 90% Identity
- -
- 80% Identity
- -