Ader012179.2
Basic Information
- Insect
- Anticlea derivata
- Gene Symbol
- -
- Assembly
- GCA_947579855.1
- Location
- OX388260.1:4344679-4353428[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0049 0.24 12.0 1.5 3 23 681 702 680 702 0.96 2 24 5.1 2.6e+02 2.5 1.1 4 23 1061 1082 1059 1082 0.84 3 24 0.08 4 8.2 0.6 1 21 1087 1107 1087 1108 0.96 4 24 8.6 4.3e+02 1.8 0.4 1 23 1148 1171 1148 1171 0.90 5 24 0.00031 0.015 15.8 0.7 3 21 1182 1200 1182 1201 0.96 6 24 0.34 17 6.3 0.6 2 23 1209 1231 1208 1231 0.93 7 24 2.3 1.2e+02 3.6 0.3 3 23 1250 1271 1248 1271 0.92 8 24 0.0021 0.11 13.2 2.1 1 23 1276 1299 1276 1299 0.93 9 24 0.15 7.7 7.3 0.0 1 23 1325 1348 1325 1348 0.90 10 24 0.023 1.1 9.9 3.4 1 23 1353 1375 1353 1375 0.97 11 24 0.0051 0.25 12.0 0.1 1 23 1381 1404 1381 1404 0.95 12 24 0.017 0.86 10.3 0.7 1 23 1417 1439 1417 1439 0.97 13 24 0.00022 0.011 16.3 1.8 1 23 1491 1514 1491 1514 0.97 14 24 0.002 0.098 13.3 1.5 1 23 1574 1597 1574 1597 0.96 15 24 0.0025 0.12 13.0 1.5 2 23 1625 1647 1624 1647 0.95 16 24 0.024 1.2 9.9 0.1 2 23 1653 1675 1652 1675 0.94 17 24 0.008 0.4 11.4 0.3 1 21 1719 1739 1719 1740 0.95 18 24 0.0015 0.075 13.6 0.6 1 23 1750 1772 1750 1772 0.93 19 24 0.00022 0.011 16.3 0.3 2 23 1866 1888 1866 1888 0.93 20 24 4.1e-07 2e-05 24.9 1.4 3 23 1895 1915 1894 1915 0.98 21 24 0.0065 0.32 11.7 0.4 1 23 1936 1958 1936 1959 0.95 22 24 0.42 21 6.0 0.0 1 23 1980 2002 1980 2002 0.97 23 24 0.038 1.9 9.2 0.5 1 23 2008 2031 2008 2031 0.95 24 24 0.00045 0.022 15.3 0.4 1 23 2039 2062 2039 2062 0.96
Sequence Information
- Coding Sequence
- ATGACTGTGAACTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAGTTACTGCCGATTTTCCCTACCACCAGTTCGGATGACATGGAACCTCCCATCCTCGCTTCAAGAATAAAGGATTGCGTGTCTGTAGAGATAAACGAAAATGACGACCTGCCGACGAATGTCTGCAGGAAATGCGTGGACAATGTCAACAACTGGCATTTATTCAAGACTGTATGTTCAAAGACACAAAACAAACTACTGTCTTTCTCACGAAAGGATGGAAGCCTACTAGAAGAGGTGCATATCAAAAGTGAACCCTTCTCTGATGAGGCTTATGATGATGGAGTGGTTATTGATGGCTCATACCCTGATGCTGAGAATGCAGCCTTCTCAAGTAAGATTCAGCCTGAAGGGCCCCCTATCCTGGCTTCATTGGGGCTCACACCTAGGAGTGATAAGAAATGTGTGGATCCACGAATGGATTGGCATCGAGTCCATGCTATATTGGATATGGTTCAAGACAGCAATGTCATTGACTCGCTGCAAACCATTGAAGAGAGTGATGTTTTGCACCACTCCGATCATGAGTCAGACACAGAGGCTGAGCTTCAAGCAGACTTAGATGATACTTATATCGACTGTAAAAAAGGCTATGCCTGCAGAAATAGAAACATCTTATTAAAAAACCCTCAAAAAGTGAGCTCAGGTTCTAAGGGTGTCTTAAAACTGAAAAAACGGAAACCCAATATTGATAAACATTGCGGTAAAGCAATAAACGCTTGGCAGCTTCTGTTCACGGATGATCTTCTCGATCTGATTGTCTCATCTACGAATGAAAAAATACTCAGATGTGGCAAAGGCTTCGAAGGGTGCACCAATATTGGTGAAGTCAAAACTCTTATTGGAATTCTGTACTTGAATGGTATAATGAGGCCAACTCATCAGAAATGCAGTGACCTCTGGGACAAGAAATGCGGCGTCCCCTGTGTTATAGACGCAATGACAAGCGATCGCTTCAACTTTCTCTTACAAAACATCTGTTTCTATAATCAAGAGGACGACGATAGTATAATGCAATTCGATACCATGAAACGTATTCGGAAAGTGTTCGAAATATTCGCTTTGAACTGCAGAACAACCTTCGATGTCGAGAGCACCGCCGTCGTTGATGAGATCATTGTGCCAGTTTATGGACCTTGCCCGTTTCGATACGATATCGATAAGAAACCACTGAAACGTGGAATTAAAATGGTGCTGCTGGTCGATCCGAATAATTTCTATGTGAGCAATTTAGACGTGATTACCGACCCATATTTCGGAGCTGAGGAGATTGTAAAAAAAATTACTCAACATTTGTATGGAACTGGAAAAACGATCGTAATGGATAGCTGGTACTTTTCCTCTCATTTGCTGGCAACACTGAAGAATTATCAGCTTTATACAATTGCAGCTTTGCACCCAAAGAGCGATGAAATACCACCTCTCTTTCTATCGCACTACAGAAAAAACTGTACGTACATTTCTGGGTTTTTAGACGGAGAAGTCTCGTTAACGTCCCACGTGAACTCAGAGTCAAGATCAACCAATGTCGTGACAAACTTGCCACAGTTTTATCGGAAGGGTCACACGAACCGCACAACCTCTGTATCAGCATATAAGAAGAACCAATCGGCAGTGCAAGTTCTGGATGTCCTGATGCATTATTATACGACACTGCAACATACAAACGATTGGACGCTGTCATTGTTCTTTACGTTGCTCAATATTGCTTCAGTCAACGCTCAAGTTATATGGAGCTCTCGGAATAATATTGTCACTCCAAGACGTTCGTTTATCAGAGATTTGGGGTTGGGTCTGTTCGAGGATGATCTGTTATCAGTATCAGGGTTGGAGAGTGAGAAGGACGAGGAAGATGATTATGAAGAAGAACCCAAAGCCCCTCAACCGGTGAAAGTCCCGCACATGCCCGAGGTCTCAATCACAGTGATGCGACCCACCGGAGAGACTCTTCACGCCCGTCAAGGTATCCAACAAATCGCATCTAAAGACTGCCTCATCTGCGGACGATCCTACAGATACTCACACAACGCGAGGCGCCACGAACTCACATCCCACAAATTCGACCGCTACACAAACAAAATTAACAACAAAAAATCACACTCGCACATGCAACCTAAACTCAGACCCAACCCTTTCAACCCGAAAGCGCGGCTCATGCCCAATCCGATTAGCCATAAAATGCAGTTGTTACCCAAAATGATGCCGAAAATGATGCCGCACAAGATTATTACCCCACCTAAACCAATACCGATTAAATCTTCTAAGACACAACAGAATAATTTGCCCTATCCGTTGCGCATCAAAGCCCTCAAAGATTTGCAAATAAAGAAGAAGGAACCGCAGATTTTGAAGACGTTACTCACATCGAAGCCTGAAGTCCTGGTGTCGGAACCGGAGATCATGAACTCCGGCCCCGAAAGTCCAGAAACTCTGATATCAGAGCCAGAAATTGCTTCTTTTCAAGTTGAGGCGATTCTATCGGAACCCAATGACTACGATGAAAATCTAGAAGACGGAGATGCAGAAATGCAAAACAACCAGAGTCAAAATTACGACACCGTCGATATGGACTCTGAAAATGAAATAGAAATTGCGCGACAGCAAGAAAACGTGGATCAGAACGAAGAAAACCACGAGGAAGATGACAATAATTTGAACGACGACGGAAACTTTGATGAAGCCGACAAAGAGGGTGAAAATGAAAGTGAGAAAGATCTCAGCCCTCAAGACGTAGGCGTCAGCGAGGAAGGCAATGGGAATATGGACGCTGACGAAAATTTCGAAGCAAAGGACGATGAACATAATAATGATGAGGAGGAAGACGTAAATGCGGAAGGTGAGAATGAAATTGATGCCAGTCAGGGGGCTGAAGAAAACGACGAGGATGATGATCCGCCGGTTGGACTAGCGCCGGAAGTCGAGCTGAATGAAGACACGCACAACTCCAATACGTTCAATAGCGAGATAAACGATGACGAAGAAGAACCCGACGAAAGCGCCGAGCTCAATGATACTATCGAAGGTGAAAACAAACTTGTCGACGCCGATAAAGCTTACGTCACTCCCGCTCAAAAAGACTTTATTAAAAGATATCGCGATATAATCCTACAGATAAACACGAAGAGATGCCTTTGTTGCGATAAAGAGTATCCACGTAGAAAGGCTGTTATTCAACATCTACAGAAAAATGGACACAAAGTTCCAAAGCACACTTGCTACAATTGCGTCGTCACTTTCACTCATATTGGCGCTCTACTCAGCCACATGAGACAAAGCTCGTGCACCGATCTGTGGAAGATTATCTACGACGAGAACGGTATAACGAGCGACATGGTCATTGAGGAGCCCAAGAGCAAAATCCAAGCCAAAGATATTTTCAACGCAAAATCTTATGCGTGTAGGCTGTGCCCTGCAAAATTCCAGTTAAAGCAATCTATTATGAAGCATGTTTCAGAGTTCCACGAAGATGGCCAGTCTTCAGTTCCCCTTGGCTGCGTCCATTGCGGAGCCTCATACAAAGATAAATCTTTGCTCAAAAAACATATCCGCAACGGAGATTGTACGGTTTATATCCATTGTGATCTATGTTCTGAACAATTCACAAACATGCAAGACTTCAACGACCACGCATTATCTGCTCACGCTGAGCACTTTGTCAAAACTGAAAACCAGAGCACAGAAGGACGGCTCACAGACTGCTATCTTTGTGGGATGAAGGCCAACAGCTATCCAAATCTGCTGAAGCATTTCAAAGCATCGCACGACGAAATTCCGCATCACTGCCAGTTCTGTGGTGTCAAGTTTGAGCAGCCTGTTGATCTAAACAAACACATGTACCTAGAGCACCCTGGCCAAACTCCAGACTTGCACGCCTCAGAACCGGACATGTCCCTTGTGAAAGAAGAAGCTGAAGAATACCACTATTCCTGCACAGAGTGCAATGCGATATTCGAAACAGTGGACGCCTGGACCGATCACCAAGTAGCCGAACATAACCAAGTGGCCCACCATTGTGACCAATGCGAGAAGAAATTCTTGCGGCCCTCTGAACTCGCAGAACACAAGAACACTCACTTGAGAGTCAAATTCTATCCTTGCAGCATATGCCCTAATTCATACAGCACTCCACAAAAGTTGTCTGACCACGTTCAAAACGTGCATCCTGGTGCAGCCGCTCAGGTCAATGCAGATAATGACTTTTTCTGCGGCATTTGTATTCGTGGTTTCAAAAGTCGCCAAGCTTACTCGAACCACATGCGCATTCATGCAAAAGTGCCAACCACCAATAGAAAACCTGGTGAACCTAAAGGATTCGATCCACGCATCATTGGAAAACCTATCAAGCAATTCACAATATCCAATGTGGTACCACCTGGCTTCATTAACTTCAAGCCAAATGCGAATGTTCCTAATGCGCCTTATTCGTGTGATATTTGCGGCAAAGGCTTCATGCATAAGAAAAACATTTGGAAACACAAAAAAGTGTTGCATGCCGATATAATTAACGACAGAAACGACAGCGAAGAGAACACGATGCATGCCTCGACCGAAGAAGACGAATATAATGTTGATGAAAATGGCGCAATACTTTCAACGCCTCAATTTAACAGTTTTAATTTTACTAATTTCACTAATAATGCGATACAATCTCAGCCAGATCCAATGCCTTTTTCATGCGAGTTATGTTCGAAGCGATTCCCACTTAAAACTAGTCTGTGGAAGCACAAACGCGCTAAGCATGGAATCACGAATGCAAACCCCGGCGGCAGCGGCGAAGGGCAAACGCACGCAGCCACCGGTGAAGGCGGTGGTGGTCGATCTAGCTGCACCATTTGCAAAATTACATTCGCAGACAAAAAATCTTACTATCGTCATAGGAAGAACGTTCACAAATCAGCGACACAAATGTGCAAGATTTGTGGCAAGCCACTGAATTCTACACAAGAACTGTACGAACATCTGAAAGCGGCCCACGCTAGAGAGTTGCTGGGGTACAATGCCAATCAGAGTACGAGTAAAGCGCAGGATGTATCGCAAGATATGGACGGCGATTTTGACAACGAACAAGACGCTGTAGATCCTAGCGTCGACTACCAAGCACGATATCCGTGCGATACATGTGGCAAACAGTTTGTGGGGCTGCTCTCTTTGCAAAATCACCAGTGTATAAACCAAGTACCGTCGCAACCCCAGACTTTCGACTGCGAGATCTGTCACAAGAGTTACACCTCCATTGCCGCATTGAAGAGTCATCGCGGCTGGCATCTTCGATCGCCCGATGGCAAGGCAGCCGCTAACAACAGCGGTCTTTGGATGCCGCAGCACAAGGTCACTAGCAAGGTCAGCAAACATGAAGTTGTTGAACCGGTCACACCTGCTCCGTCGACCTCGTCGGTTGTGACTCGACTCCATTCGACACCCGCGGCCGCGGCCAAAAGAAGGTTACCTCCGGAAGTGGAAGTGACCGTTGTAAATCCGAACAAAAAGATGCGCTCAGACGATTCAGTTGAGATGGATCAGCAAAACGATAGCGGTGAAGGGAGGTATTGCACGATATGCGACAAAGATTTCACGAAACGCGCCGCATATCAACGCCACATGGACGAGGTTCATCAGCCGAATTCCGTATTTTGTCCCGTCTGTGATAAGAGTTTTACAAGGAAATCTACTCTACTCGTGCACATGAAAAAGCACTACGAGGGCGGTGGGGAGGGTAGTTCCTCGACAACCGCACAGGCGGATGAAGATGAGGGATTTTCCTGCGACCTCTGCGGTGCACAGTACGACACTGAGAACGCTTTGAGGGCGCATCGAATCCGGCATCACGGGGAGGAATCGGGGGAATCGGAGGATGATGGTCAAGTGCCGATCGCACAGCCCGGGGAGTTTACATGCGGTCAGTGCGGGGACGGCGTCGCCACGGCGCGCGATCTGATCACGCATCGCGCTATACATGCAACACCTACTAAATTCTTCTGCAACATTTGCCAAGTTTATTTCGTGAGAGCTCTGGATCTGTCTTCGCACACGCGTGCGAGGCACGCAGACAACGAGAAAGTGTTCTTCCCCTGCGCCATGTGCGATCGCTTCTACATGAACAAGAAGAGCTTGCAACGACACATTGACATGGCCCACTGA
- Protein Sequence
- MTVNYDRVCRLCLSSRGELLPIFPTTSSDDMEPPILASRIKDCVSVEINENDDLPTNVCRKCVDNVNNWHLFKTVCSKTQNKLLSFSRKDGSLLEEVHIKSEPFSDEAYDDGVVIDGSYPDAENAAFSSKIQPEGPPILASLGLTPRSDKKCVDPRMDWHRVHAILDMVQDSNVIDSLQTIEESDVLHHSDHESDTEAELQADLDDTYIDCKKGYACRNRNILLKNPQKVSSGSKGVLKLKKRKPNIDKHCGKAINAWQLLFTDDLLDLIVSSTNEKILRCGKGFEGCTNIGEVKTLIGILYLNGIMRPTHQKCSDLWDKKCGVPCVIDAMTSDRFNFLLQNICFYNQEDDDSIMQFDTMKRIRKVFEIFALNCRTTFDVESTAVVDEIIVPVYGPCPFRYDIDKKPLKRGIKMVLLVDPNNFYVSNLDVITDPYFGAEEIVKKITQHLYGTGKTIVMDSWYFSSHLLATLKNYQLYTIAALHPKSDEIPPLFLSHYRKNCTYISGFLDGEVSLTSHVNSESRSTNVVTNLPQFYRKGHTNRTTSVSAYKKNQSAVQVLDVLMHYYTTLQHTNDWTLSLFFTLLNIASVNAQVIWSSRNNIVTPRRSFIRDLGLGLFEDDLLSVSGLESEKDEEDDYEEEPKAPQPVKVPHMPEVSITVMRPTGETLHARQGIQQIASKDCLICGRSYRYSHNARRHELTSHKFDRYTNKINNKKSHSHMQPKLRPNPFNPKARLMPNPISHKMQLLPKMMPKMMPHKIITPPKPIPIKSSKTQQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIMNSGPESPETLISEPEIASFQVEAILSEPNDYDENLEDGDAEMQNNQSQNYDTVDMDSENEIEIARQQENVDQNEENHEEDDNNLNDDGNFDEADKEGENESEKDLSPQDVGVSEEGNGNMDADENFEAKDDEHNNDEEEDVNAEGENEIDASQGAEENDEDDDPPVGLAPEVELNEDTHNSNTFNSEINDDEEEPDESAELNDTIEGENKLVDADKAYVTPAQKDFIKRYRDIILQINTKRCLCCDKEYPRRKAVIQHLQKNGHKVPKHTCYNCVVTFTHIGALLSHMRQSSCTDLWKIIYDENGITSDMVIEEPKSKIQAKDIFNAKSYACRLCPAKFQLKQSIMKHVSEFHEDGQSSVPLGCVHCGASYKDKSLLKKHIRNGDCTVYIHCDLCSEQFTNMQDFNDHALSAHAEHFVKTENQSTEGRLTDCYLCGMKANSYPNLLKHFKASHDEIPHHCQFCGVKFEQPVDLNKHMYLEHPGQTPDLHASEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSICPNSYSTPQKLSDHVQNVHPGAAAQVNADNDFFCGICIRGFKSRQAYSNHMRIHAKVPTTNRKPGEPKGFDPRIIGKPIKQFTISNVVPPGFINFKPNANVPNAPYSCDICGKGFMHKKNIWKHKKVLHADIINDRNDSEENTMHASTEEDEYNVDENGAILSTPQFNSFNFTNFTNNAIQSQPDPMPFSCELCSKRFPLKTSLWKHKRAKHGITNANPGGSGEGQTHAATGEGGGGRSSCTICKITFADKKSYYRHRKNVHKSATQMCKICGKPLNSTQELYEHLKAAHARELLGYNANQSTSKAQDVSQDMDGDFDNEQDAVDPSVDYQARYPCDTCGKQFVGLLSLQNHQCINQVPSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVEPVTPAPSTSSVVTRLHSTPAAAAKRRLPPEVEVTVVNPNKKMRSDDSVEMDQQNDSGEGRYCTICDKDFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYEGGGEGSSSTTAQADEDEGFSCDLCGAQYDTENALRAHRIRHHGEESGESEDDGQVPIAQPGEFTCGQCGDGVATARDLITHRAIHATPTKFFCNICQVYFVRALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIDMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00663313;
- 90% Identity
- -
- 80% Identity
- -