Basic Information

Gene Symbol
Hr39
Assembly
GCA_963971155.1
Location
OZ020118.1:12653130-12655919[-]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 0.32 3.5e+03 -2.1 0.5 76 76 119 119 18 205 0.53
2 5 3 3.3e+04 -8.8 10.9 53 125 238 312 138 364 0.58
3 5 3.9e-09 4.3e-05 24.0 0.0 1 25 434 458 434 465 0.93
4 5 0.0038 41 4.3 0.0 89 132 499 542 460 556 0.61
5 5 9e-78 9.8e-74 250.1 0.9 136 408 496 758 483 758 0.82

Sequence Information

Coding Sequence
ATGACGACAACCAATCAGAATATTTCAATGCTAGGTGCTGCAACAGTTAATAACCCACCGAATATACAACATCAGCAATCacgtaataataatatatcagttacaaatataaaatgtgaAGATATTATTCGACCACCATCAGCACCAGTTATTTCATCTGGTGCAAACGGTataatatcatcatcatcatgcACATCGTCTACTACATTAACATCATCTATAAGTAGCAATAACTTTTTCAATGGAGGAATACGAATTTCAGTTCCGAAAGTTGAAGATTCTGATGAATCTGAATCTGAATTATCAAATATTGAAAATGCAAAAGTAAATCGTAGATCTAATAATAGCACAAGTAAAAATGGACCGCGTCCCATGTCATGGGAAGGTGAATTATCTGAGACTGAAGATCTTATGGATACAGAAAATTCAGTTAGTAATGATAAACAATTCGATGATACACAAATGTCAACATCGAcaataacaaaagaaaatacattaaaatgtGATACGACGACTACTAATAAAACAGATTACGATCAAATTTCTATTGAAACAGGCTCTGTGATATATTCTTCTATTGGATcgaaaaaatttcaaacagatttggtaaatttaaaatatgaacCTGGACTATCGGATGCAACAGCATCAAGTGGCCTTAATTCACCATTATTGGCAAGATcgaaaacaaatttattacCAGCTAATCCAAGTCCAGATTCAGCTATTCATTCCGTTTATACGCATAGTTCACCGAGTCAGTCACCATTAACATCACGTCATGCACCATACACTCCATCACTTAGTCGAAATAATAGTGATGCATCTCATAGTAGTTGTTATTCATACAGTTCAGAATTTAGTCCAACTCATTCACCCATACAAGGTAGACATAATATTTATAGTAATTTTAATGGAACATCGCTTCATCATTCCATCCTGTATCGACCAATTCTTGATAATGCAACTGAAACTACACAATCATTAGGTTCACCAGcacaacaacaacaaagaAGGCCTGATGAAATTTTACCAGAAAATGATGCTATTCCATCGCCTGGTATATCTCGACAACAATTGATTAATAGTCCTTGTCCAATATGTGGTGATAAAATTTCTGGATTTCATTATGGGATATTCTCATGTGAATCATGTAAGGGATTTTTTAAACGAACAGTACAGAATCGTAAAAATTATGTGTGTGTACGTGGCGGGCCATGTCCAGTAACAATATCGACTCGTAAAAAATGTCCAGCATGCCGTTTTGAAAAGTGTCTACAAAAAGGAATGAAATTAGAAGCAATACGTGAAGATCGTACCAGAGGTGGTCGATCGACGTATCAGTGTTCGTATACACTTCCAAATTCACTATTAAATCCAATTATTGGTTCGGAAACACCATCAACAAGTTCACAAACAAATCAAAGGATCGGAGCTAATGGTTGTCCAATTAAAATAGAACAGCCAGATACATGTAATGGTAGCAGTAACAGTAGTACTGGACCAGGCAGCCATCGAAGTATTCCACCGTTGCTACAGGAAATCATGGATGTCGAACATTTGTGGCAATATAATGAAGAAGAGCTTTCAAGACTGAATCAACCAACATCCAGATCAAATTCAAGTGATTTAACAACAAATCCCTTACTTGCTAGTGCTGGTCTATCGTCAAATGGTGAAAATACAAATCCAGACTTAATAGCAAATCTTTGTAGTGTTGCCGATCATCGTTTATACAAAATTGTTAAATGGTGTAAAAGTTTACCCCTGTTTAAATATATATCGatCGATGATCAAATTTGTCTTCTAATTAATTCATGGTgtgaattattattattttcatgttgTTTTCGTTCAATAGAAACACCTggtgaaataaaaatttcattaggTAAATCAATAACACTTGCACAGGCGAAGTCTAGTGGTCTGCAGGCATGCATTGAGAGAATGCTTAACCTTGCTGAACATTTGAGACGTTTACGAGTGGATCGATATGAATATGTTGCCATGAAAGTCATTGTTCTCTTACAATCCGataCATCGGAGTTACGAGAACCAGTTAAAGTTAGAGAGAGTCAAGAAAAAGCATTACAAGCCTTACAAGCCTATACATTAGCACATTATCCAGATTCACCAGCTAAATTTGGTGAATTACTTTTAAGAATTCCAGAACTACAGAGAACATGTCAGcttggtaaggaaatgttaacaataaaatcaaaagatggtgaagattttaatttattgatgGAATTATTACGTGGAGAACATTGa
Protein Sequence
MTTTNQNISMLGAATVNNPPNIQHQQSRNNNISVTNIKCEDIIRPPSAPVISSGANGIISSSSCTSSTTLTSSISSNNFFNGGIRISVPKVEDSDESESELSNIENAKVNRRSNNSTSKNGPRPMSWEGELSETEDLMDTENSVSNDKQFDDTQMSTSTITKENTLKCDTTTTNKTDYDQISIETGSVIYSSIGSKKFQTDLVNLKYEPGLSDATASSGLNSPLLARSKTNLLPANPSPDSAIHSVYTHSSPSQSPLTSRHAPYTPSLSRNNSDASHSSCYSYSSEFSPTHSPIQGRHNIYSNFNGTSLHHSILYRPILDNATETTQSLGSPAQQQQRRPDEILPENDAIPSPGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCVRGGPCPVTISTRKKCPACRFEKCLQKGMKLEAIREDRTRGGRSTYQCSYTLPNSLLNPIIGSETPSTSSQTNQRIGANGCPIKIEQPDTCNGSSNSSTGPGSHRSIPPLLQEIMDVEHLWQYNEEELSRLNQPTSRSNSSDLTTNPLLASAGLSSNGENTNPDLIANLCSVADHRLYKIVKWCKSLPLFKYISIDDQICLLINSWCELLLFSCCFRSIETPGEIKISLGKSITLAQAKSSGLQACIERMLNLAEHLRRLRVDRYEYVAMKVIVLLQSDTSELREPVKVRESQEKALQALQAYTLAHYPDSPAKFGELLLRIPELQRTCQLGKEMLTIKSKDGEDFNLLMELLRGEH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00234046;
90% Identity
iTF_00118777;
80% Identity
iTF_00118777;