Basic Information

Gene Symbol
nfxl1
Assembly
GCA_951804975.1
Location
OX638122.1:16852745-16855463[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.1 6.4e+04 -3.2 1.1 15 19 126 130 125 130 0.81
2 16 0.13 7.6e+03 -0.3 0.4 4 10 161 167 160 167 0.95
3 16 5.5e-08 0.0034 20.0 15.1 1 18 175 191 175 192 0.98
4 16 3.4e-07 0.02 17.5 12.5 4 19 231 246 229 246 0.93
5 16 8.4e-06 0.51 13.1 14.0 1 18 281 299 271 300 0.90
6 16 2.9e-05 1.8 11.3 10.7 1 18 336 353 336 354 0.97
7 16 0.012 7e+02 3.0 8.0 1 12 388 399 388 399 0.94
8 16 0.48 2.9e+04 -2.1 0.8 6 10 409 413 408 413 0.95
9 16 7.9e-08 0.0048 19.5 12.5 1 18 419 436 419 437 0.92
10 16 0.0001 6.3 9.6 9.8 9 19 485 495 483 495 0.90
11 16 0.0025 1.5e+02 5.2 6.2 1 12 505 515 505 515 0.95
12 16 0.85 5.2e+04 -2.9 5.8 14 18 547 551 547 552 0.89
13 16 0.001 63 6.4 8.1 1 12 588 599 578 599 0.90
14 16 1.8 1.1e+05 -4.0 3.8 6 10 615 619 611 619 0.77
15 16 0.0013 77 6.1 17.3 3 19 628 644 627 644 0.92
16 16 0.0005 31 7.4 14.8 3 16 690 703 679 709 0.83

Sequence Information

Coding Sequence
ATGCAGAAATTTAGACGAGCTCAAGCAGAGAATAAACTTTCAATCAACAAACATTTAGAAGCAAATGCTTATTTAGAATCATCCAGTGAAGATGAAGatgaaaaaaacgaagaagataTACAGAATGTTGTTGAAAAAGTATTGGCTGCTTACCAAGGGAAGGAGGCAGATGCAGAAAAGattttatcatatttaattaatatctttGAATCTGGCAGTGCTGTTTGCTTAATATGTATTTCAACTGTGAGAAAAGCAGATCCAATATGGAACTGCAGCAAATGTTTTGCATTTTTACATCTATCTTGTATTTTACATTGGATACAGGATAGCTTAACTGTTAAGCGTGAGAAAGGTCTGACACAAATATGGgcatgCCCAAAATGTCGTATGGAATATGGACAGGATGAAATTCCACGTAACTATAAGTGCTTCTGCAAAAAAGTTATAGACCCTTCACATCAACCATGGAATATTCCACATTCCTGTggagaaatttgtaacaaaccCTTGCAGCCAGAGTGTGGTCACAAGTGTGTTTTACTCTGTCACCCTGGACCATGTCCACCTTGTGCAAAAATATTATCTGTCAAATGTTACTGTGGCAAACAAATGCCACAGCAACGGCGATGCAATACCAAAGAGTGGAGTTGTGGCACTGTGTGTAACAAGAAGTACAAACAATGTTTACATATTTGTAAAGAAGTATGTCACACAGGAGAATGTCCACCTTGTTCAGAACTATTACTACTTGAGTGTCATTGTAAGAGTAACAAGGAACTGAAGGCATGCTCAGAAGGTGCATGGATTTGTGATAAACTCTGTGGCAGGCCTCTTTCTTGTAATGTTCATACATGCCAAAGTACTTGCCATTTACTTGGCGATTGTGGACCATGTTTACTGGAAAAAAACAGAACGTGTCCATGTGGGAAAAAACGTTATGCTATTTCCTGCAAGCAGGAACAATTACCCACATGTGGGGACACATGTGGCAAATTATTAGACTGCGGTTCGCATCGTTGTAACATGAGATGTCACACGGATCGTTGCGGACAATGTTTAGAAGTCGTCACGAAATCGTGTCGATGCGGTAGCTATAAGAAAGAAGTCGCTTGCGGCAAAGAGTTTCACTGTAATAAAAAGTGCATGCAGATACGCTTGTGCGGGAAACATTTGTGCAATAAGAAATGTTGCGACTGTGTGATCAAAAACACGTATAACATGTGCGAAAAGGTATGCAACAATACTTTGAACTGTCGAAAGCACAAATGTTCCGCCCCCTGTCACAGTGGCCCCTGTTATCCTTGTGCACAAACTGATGTTATACAATGTAGATGCGGATATAATAAGATAACAATACCATGTGGTACAGTGAAGAAAATAAAACCTCCGCCTTGCAACAAGTCATGTAAAATACCACCTATCTGTCATCATCCTAAAAGAGAAACTCACAAATGTCACCAAGGTCCTTGTCCACCTTGTAAAAAGATTTGCGGTTTAGTATACAAACGATGTGGTCATTCTTGTGTTGCTGTTTGTCATACGAAAGTCTGGGTAAAGGTGACTAAAAGCGATGTAAAGACGCAACCTGCTGGACCATGGGATATACAGAAAGAAACTATGCAGCTAAAAACGTTACCGTGTCCACCGTGCGAAGTTTCGGTACAAGTTACATGTTTAGGAGGGCACGAGACACGTCCGTGGCTTTGTCACATGGCCAAACCTACCTCTTGCGGAAGATTATGCGGCAAAATGTTACCATGTACAAATCATACATGCGAATTGATTTGCCATAGAGTACCGTTGTCCGACGGAGATAGAAATACTACTCCTTGTATGGAGTGTGAACAACCATGTCAGTTTCCACGTCCGTCTGGATGCACGCATTCGTGCCCGAAACCTTGTCACCCTGCACCGTGCAGTCCTTGCAAGCAATTAGTTAAAATCTCATGTCATTGTGGTATAGGTACCTTATACCGTAGATGTGTTGAACTGACATCAGCCACGACCGATGAACGTAACGAGTTACTCAAATGCGGGAACCAATGCCCCAAAAATtattcTTGCAACCATCGATGTATGAATAACTGTCATCCAGGTCCatgtaaaaatgaaaaggaaTGCAACAAGAAAGTGAAACTATCTTGTGCATGCAAACGTATTAAAAGAGACTTCATTTGCTCAGTGGTGCAGAGAGAGGAAATTTGTATAGAATGTGACGATGTTTGTATCAAATTGAAGAACGAGAAATATCAAGCTCAAGCAGCGTTATTAGAACAGGAACGACAAGCGGAAGAGATACGCAATCAGCAAGAAATTGAGAAGTTCGAACGAAAATTCAAACCCCGTCGTAAAGGAAGGGATAAGATGGATAcaaaaaaattggagaaaaagaCATGCGATACTTATAAGAACTATTGGATTTTAGCAATTTTTATATGCTTAATAGGTATTGCAATAACTTATGTGATGATTGTTTAA
Protein Sequence
MQKFRRAQAENKLSINKHLEANAYLESSSEDEDEKNEEDIQNVVEKVLAAYQGKEADAEKILSYLINIFESGSAVCLICISTVRKADPIWNCSKCFAFLHLSCILHWIQDSLTVKREKGLTQIWACPKCRMEYGQDEIPRNYKCFCKKVIDPSHQPWNIPHSCGEICNKPLQPECGHKCVLLCHPGPCPPCAKILSVKCYCGKQMPQQRRCNTKEWSCGTVCNKKYKQCLHICKEVCHTGECPPCSELLLLECHCKSNKELKACSEGAWICDKLCGRPLSCNVHTCQSTCHLLGDCGPCLLEKNRTCPCGKKRYAISCKQEQLPTCGDTCGKLLDCGSHRCNMRCHTDRCGQCLEVVTKSCRCGSYKKEVACGKEFHCNKKCMQIRLCGKHLCNKKCCDCVIKNTYNMCEKVCNNTLNCRKHKCSAPCHSGPCYPCAQTDVIQCRCGYNKITIPCGTVKKIKPPPCNKSCKIPPICHHPKRETHKCHQGPCPPCKKICGLVYKRCGHSCVAVCHTKVWVKVTKSDVKTQPAGPWDIQKETMQLKTLPCPPCEVSVQVTCLGGHETRPWLCHMAKPTSCGRLCGKMLPCTNHTCELICHRVPLSDGDRNTTPCMECEQPCQFPRPSGCTHSCPKPCHPAPCSPCKQLVKISCHCGIGTLYRRCVELTSATTDERNELLKCGNQCPKNYSCNHRCMNNCHPGPCKNEKECNKKVKLSCACKRIKRDFICSVVQREEICIECDDVCIKLKNEKYQAQAALLEQERQAEEIRNQQEIEKFERKFKPRRKGRDKMDTKKLEKKTCDTYKNYWILAIFICLIGIAITYVMIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00217442;
90% Identity
-
80% Identity
-