Aplu098329.1
Basic Information
- Insect
- Anthophora plumipes
- Gene Symbol
- -
- Assembly
- GCA_951804975.1
- Location
- OX638117.1:15218218-15222343[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.011 5.7 10.2 0.0 1 20 63 82 63 84 0.95 2 19 0.0073 3.7 10.8 3.0 1 21 101 121 101 122 0.96 3 19 0.00013 0.065 16.3 3.0 2 23 158 179 157 179 0.94 4 19 0.00018 0.093 15.8 2.2 1 23 183 205 183 205 0.97 5 19 0.00017 0.088 15.9 0.6 3 23 213 233 212 233 0.97 6 19 1.6e-05 0.0078 19.2 4.5 2 23 240 261 239 261 0.96 7 19 0.11 56 7.1 2.5 1 19 270 292 270 294 0.73 8 19 0.17 86 6.5 0.2 3 23 300 319 299 319 0.95 9 19 0.47 2.4e+02 5.1 2.3 3 13 327 337 326 340 0.89 10 19 0.02 10 9.5 2.3 1 23 423 445 423 445 0.97 11 19 6.6e-07 0.00033 23.6 0.8 2 23 455 477 455 477 0.96 12 19 0.00032 0.16 15.1 6.1 1 23 483 505 483 505 0.98 13 19 0.058 29 8.0 0.4 1 23 509 531 509 531 0.97 14 19 4.5e-06 0.0023 20.9 1.5 3 23 539 559 537 559 0.97 15 19 4.2e-05 0.021 17.9 0.1 1 23 565 587 565 587 0.98 16 19 0.043 22 8.4 0.3 1 23 593 615 593 615 0.95 17 19 3.9e-07 0.0002 24.3 0.1 2 23 622 643 621 643 0.97 18 19 6.9e-07 0.00035 23.5 0.6 1 23 649 671 649 671 0.98 19 19 7e-08 3.6e-05 26.6 2.8 1 23 677 699 677 699 0.99
Sequence Information
- Coding Sequence
- ATGAATCATTCATTGCAGTTTGTGAGTGGCCTTGTGCAACCGAAAAGCGTGAAGACTATACCAGCCAAGCTGAATCGATCACGCGCTGTTAGATCGTCGAGAAAGGAAGATGATCGTTCGTTTCTCGTTGTCGAGGATGTTATCGATGATAACACGTGCGTCGTTCAAGAGGGAACAACAGCATCGTATCGATGTGAGTCTTGCGACGAGGAGTTCGACACGGAGGCTGCTTTATTGGTACACAGAACCGAGCAGTCGATCCTTCGAACTCGCGAAGCGTTGAAAAAAGCTGAAAAGAAGTACACGTGCGACGTGTGCTGCGAGAGTTTCACGAAGAAGATGCAACTGTTCAAGCATCGTCGCGTTCGATGTAAAGAGGCGACTGTAGCCGAGAGCAAACAGCACAAACCGAAAGAGAAGAAGACGGTGAAGTTAAAACGAAAGGAACAGAATGTTCCTGTAGGTCCGATCGAGTGTAACGTGTGTCATAAAGTcttcaagaagaagaaatatctGAATGTTCACAAAACGTTGCACGGAGCGCCTCACATTTGTCATGTTTGCGGAGCTAAGTTAACCTCGGAGTATTACTTGAAAATACACATCAGAAGACATAATAAAGAATTTACCGAGTTCTGCGAGGTTTGTAACAAAGGATTCTATCTGAAAGCAACCCTGAAGACGCATATGAGCGTGCACAGCGACGACAAACCGTGTACCTGTGAGATCTGTCACAAGTCTTTTGGTAATCGAGTCTATTTGAGAAGTCATATGAAGATTCATAGTCAGCCTGAGAGTAGAAAGAAGTATAGATGCGAGATCTGTGGATTTGAGACATTTTACAGTTATTGTTACAAGGAACATCTATGGACTCATACGGGTGAAAGTCAGGTAGCCTGTGAGGTTTGTGGGAAATTGATCAGAAGACAATATATGAAGATACACATCAGAATACACACTGGCGAGAAACCGGAGATCTGTGAGTTTTGCGGAAAAGCGTTCAGCTCGAGGAAGTGCCAGGAGGTCCCCGACCGGGAAATGAAAGTAGAACCTATAGAAACTCTCGAGGGCATGGAATTGGTCAAGTACCAAAGTGACGTGTGCACGGTCGAAGAATTCGAACAGATCAGCCACCAGGAAATAGTGACCGACACGTTAGAGTACACCGACGAAACGGAATTGTGTATGACAGAGGAGCAATACGAGGAGGTTGAGAAACACTTCGAAACTAGATGTAGAAGAAACAATAGACGTCGTACGGTGATGTACGAGTGCGACATTTGCAACAAGAGAATGCGTAAAAAGTTGCAATTTCTGAAGCATAGGCAAGATCATGAGAGGAACGACACGGAGACTGTTGGTCGTTGCGAGGAATGTGACAAAAGTTTCACAGACGAGGAGAAACTTAAGAAGCACATGATCAAGGTGCATCAGAAGGAAAGACCGTTTCAATGCGAACGTTGCACAAAGTGTTTCAAAACCGAGGAATTTCTGAAgacacatttgaaacagcataACAAACGTTTCACGTGCGACATATGCGGTGTCTCAAAGGTATCCGGCTACGATCTACGTTTGCACAAGAAGAAACACAACGAGGAGTATGTGACACATTGCGAGATCTGTGGCAAAGGTTTCTACACGAATCAAACACTCGAGAGACACTTGCTTACCCATACCGGTGAGAAACCGTACATCTGTAAGGTGTGCAACACACCTTACGCGAGTGCAGCCTATCTAAACACGCACATAAAGTCCCATGGGGAACGGGAGAAGTACAAGTGCAATATATGCAACTTCGAGAGTTTCTGGAAAGCTGCTCTGAAGGTACACCTTAAGATACACACAGGGGAGAACTTGATCACCTGCGAGATCTGCGGCAAGTCGGTGTCCAGCAAGGCTTACCTGCAGATCCATATGCGTATACATTCAGGCGAGAAACCACATGTTTGCGAGGTATGCGGGAAGGCGTTCAGCGTTCGAAAGTATTTGATCGTACACCTGAGAACGCACACAGGTGAAAGACCATACGAGTGTAAGATGTGCCAGAAAAGGTTCACTCAGCAGAGCTCGTTGAACTCACACATCAAGACGCATAACGAAAGAAAGTGA
- Protein Sequence
- MNHSLQFVSGLVQPKSVKTIPAKLNRSRAVRSSRKEDDRSFLVVEDVIDDNTCVVQEGTTASYRCESCDEEFDTEAALLVHRTEQSILRTREALKKAEKKYTCDVCCESFTKKMQLFKHRRVRCKEATVAESKQHKPKEKKTVKLKRKEQNVPVGPIECNVCHKVFKKKKYLNVHKTLHGAPHICHVCGAKLTSEYYLKIHIRRHNKEFTEFCEVCNKGFYLKATLKTHMSVHSDDKPCTCEICHKSFGNRVYLRSHMKIHSQPESRKKYRCEICGFETFYSYCYKEHLWTHTGESQVACEVCGKLIRRQYMKIHIRIHTGEKPEICEFCGKAFSSRKCQEVPDREMKVEPIETLEGMELVKYQSDVCTVEEFEQISHQEIVTDTLEYTDETELCMTEEQYEEVEKHFETRCRRNNRRRTVMYECDICNKRMRKKLQFLKHRQDHERNDTETVGRCEECDKSFTDEEKLKKHMIKVHQKERPFQCERCTKCFKTEEFLKTHLKQHNKRFTCDICGVSKVSGYDLRLHKKKHNEEYVTHCEICGKGFYTNQTLERHLLTHTGEKPYICKVCNTPYASAAYLNTHIKSHGEREKYKCNICNFESFWKAALKVHLKIHTGENLITCEICGKSVSSKAYLQIHMRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYECKMCQKRFTQQSSLNSHIKTHNERK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00215160;
- 90% Identity
- -
- 80% Identity
- -