Agra051420.2
Basic Information
- Insect
- Anthonomus grandis
- Gene Symbol
- Zfy2
- Assembly
- GCA_030068095.1
- Location
- CM057947.1:24115260-24117192[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 2.1 3.7e+04 -2.9 0.0 27 38 75 87 73 94 0.71 2 6 5.2e-06 0.091 15.1 0.1 21 47 218 244 211 251 0.86 3 6 0.049 8.6e+02 2.4 0.0 21 46 277 302 273 307 0.83 4 6 0.0081 1.4e+02 4.9 0.1 21 48 398 425 395 426 0.90 5 6 5.8e-05 1 11.7 0.1 18 46 424 452 421 456 0.88 6 6 0.088 1.5e+03 1.6 0.0 22 44 456 478 453 483 0.86
Sequence Information
- Coding Sequence
- ATGAATGAGGGCAATAGTCCCGGTCCTACCAAGCTCCTTGTACAAAACACCAAAAACGTATCGCTGAAAAACTGGCACGTCATTTGCAGATCTTGCTTATGCGAAATAGAAAACGACCATTTTTCAATGGAAGAAACGTATTTGGACCGTAAGCTGTTTGATATTTACGAAAACGTTACTTCCCTGAAGTTTGAGCCTTTGCACCCTCTTCCTAAAAAACTATGCTCGACATGTTACCATGAAATAATAAGGTTTGATAGGTTTAAAAATAACGCATTAGAGTCCGAAAGGTTATTATTAGCTGTGAACAGttcaataaatgaaaatttaacagGAAAACTTGAAATACCAATAGAGGCAAAAGTTGAAAGAAAAGACTCGGAGATTGAAGCCCCTTTATTGGATAATTTTGGGAGTAACTGTGAGGATGATTCCGATGAGGACCATAAAATCCCTGTGAAAAGTGAAACTAAGTTTCTTGTCTGTGATGAATCGGCCAATGAAGTTCCTAAAATCCGGAAAAGGAGGCGGAAGATTATTTTGAAGGTAGATGAGGAGGAGCAAGTGGGTCGAAATGAAAAAGAAGTGTGCTCGGAGTGTGGAAAAGAGGTCTTATCCTACCGGATACAAGACCACATGAGAACCCACACCAaggaaaaaccttttaattGTAGCATTTGTGAAGCCAAATTTGCAGATAGAAGCAACCTAAGGAGACACGTGAAACTGCACTTAAACTATCGGCCATTTGTTTGTGAAATTTGTGGAAAAGGTTGTGATTTTATAAGACCGTCAAGTAAAAAAATCCATATGCTAACAGCCCATAAGCAGGAAAAGGACGTTTTTTGCCCCGTATGTGAAAAGGCTTTTAAGCACAAGATGTTCCTTAAGAAGCACATGGCTTCTGTCCATAATAAATCCGAGGATCCTAGTGAgGAAATACCCTCGGAATACCCTTGTGTGCATTGCGATaaaatttataagtttaaatcCAGTTTGTATGCCCATGAGAAGCGGCATGTTGatccCAGGCCGTTTTTATGTAATACTTGCGGCAAAAGCTTTACAACCAAGGCAATAATGCAAAACCACGAGAGAATCCATACTGGGGAATTGATTTATGATTGTTCGGTGTGCGACAGGAAGTTCCGGACTTTGTCTACGTTAAAAACACACGAATTGGTTCACAAGGGCGAAAAGCCCTTAAGTTGTCAATTTTGCGATAAACAATTTAGACAACACGCCCATTTAAAAACGCATATCAGGGGACAACATAATGGGGAGCGACCGTATAATTGCGACTATTGCGGGAAAAGTTTTAAGCAGAGTTCGAATTTGAGGGTTCATATTCGACTGCATACCGGGGAAACTCCTTTTCATTGTGGCGTATGCGGCAAGGGGTTTTACGACTCTTCTAGGTTAAAAAGGCATAATAAGAGGCATGACAGTGTTGTGATCAAATTCGAGGAGAAAAAGTGGGGTTTTGTTACGTTGTGA
- Protein Sequence
- MNEGNSPGPTKLLVQNTKNVSLKNWHVICRSCLCEIENDHFSMEETYLDRKLFDIYENVTSLKFEPLHPLPKKLCSTCYHEIIRFDRFKNNALESERLLLAVNSSINENLTGKLEIPIEAKVERKDSEIEAPLLDNFGSNCEDDSDEDHKIPVKSETKFLVCDESANEVPKIRKRRRKIILKVDEEEQVGRNEKEVCSECGKEVLSYRIQDHMRTHTKEKPFNCSICEAKFADRSNLRRHVKLHLNYRPFVCEICGKGCDFIRPSSKKIHMLTAHKQEKDVFCPVCEKAFKHKMFLKKHMASVHNKSEDPSEEIPSEYPCVHCDKIYKFKSSLYAHEKRHVDPRPFLCNTCGKSFTTKAIMQNHERIHTGELIYDCSVCDRKFRTLSTLKTHELVHKGEKPLSCQFCDKQFRQHAHLKTHIRGQHNGERPYNCDYCGKSFKQSSNLRVHIRLHTGETPFHCGVCGKGFYDSSRLKRHNKRHDSVVIKFEEKKWGFVTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00117385;
- 90% Identity
- iTF_00117385;
- 80% Identity
- iTF_00117385;