Agra001729.1
Basic Information
- Insect
- Anthonomus grandis
- Gene Symbol
- -
- Assembly
- GCA_030068095.1
- Location
- CM057936.1:14275400-14282178[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1 2.7e+02 4.5 1.7 1 21 267 287 267 288 0.93 2 19 1 2.7e+02 4.5 6.1 1 23 317 340 317 340 0.94 3 19 0.27 70 6.4 0.2 1 23 373 396 373 396 0.92 4 19 0.00036 0.094 15.4 2.4 2 23 491 512 490 512 0.97 5 19 0.29 75 6.3 0.1 1 22 531 551 531 553 0.82 6 19 0.00031 0.082 15.6 1.2 2 23 557 578 556 578 0.96 7 19 0.0018 0.46 13.2 0.2 3 23 615 636 613 636 0.95 8 19 4 1e+03 2.7 1.9 3 20 681 698 680 702 0.84 9 19 0.0015 0.39 13.5 4.3 2 23 715 736 715 736 0.98 10 19 1.7 4.5e+02 3.8 0.7 2 23 747 768 746 768 0.91 11 19 0.013 3.5 10.5 7.8 1 21 799 819 799 821 0.95 12 19 0.02 5.3 9.9 1.2 3 23 832 853 831 853 0.97 13 19 0.00028 0.073 15.7 0.7 1 23 884 906 884 906 0.97 14 19 0.00011 0.029 17.0 2.3 2 23 916 938 915 938 0.95 15 19 0.00029 0.076 15.7 0.1 1 23 960 982 960 982 0.92 16 19 0.019 4.9 10.0 4.2 2 23 1064 1085 1064 1085 0.97 17 19 9.2e-05 0.024 17.3 0.8 1 23 1121 1143 1121 1144 0.96 18 19 4.7e-07 0.00012 24.5 0.8 1 23 1153 1175 1153 1175 0.99 19 19 0.006 1.6 11.5 1.6 1 23 1194 1217 1194 1217 0.92
Sequence Information
- Coding Sequence
- ATGTTCGGTTCCGGCCAGAACCGCAGACGACATCAGAACATGTTGCACGCGAAAAAAGAGCGGCGCGCTAAAATGGCGGAGATCCgaaaacaaaagaaacattTACCCGAATCGAACAATAAGCAAGAGGTTAACCTATCGGATGATAATTCAACAAAAACAGACAGTCAACCAGAAAATAATGTCGAGGACAATAGCGAAATAAAGTCGACGGAAATCACTTCTACTTCCGACTCCGGGGTATCGAAAGAGCAGCAAAATGATGATGAAAGTACCGCAACTGAAACTACTATTGTAGACGATAAAGAAAAGGATGACGTTAATGAAGCTGTTTCTAAAAATGTCCCTGAAGATATGGAGATTGATGATACATTGGGTTCTGAAAAagGTCAAAAGATTGGTGAGGACAAATCAATAACAGAGGAATCAGATTGTGCAACGCCAATTTCtgaagaacaagaagaaaatAACGAAGTTAACCCGGAGAACCAGCGAACTAACGAAATAAAAGTGGAAAAGCAGGAAAGTAATGTAGGGAAAACGGAAACCAAGTCGACCACATCGAAAAACGACGAAAAGAAGATCGAATTCGCGGCGGGTCTTCATTTGGTCCAAAAAGACACAATGGGAGCCGCAAAACCGTCAcaattatcaaaaattgaaCTGAGTTACGCGGAAAAGTGCAAAGCGATGATTTCCATGTACCAAACGCTGCAGTGCGCCTGCCATAACGTCCAGCATAAGCAACTTAAGCACTTACTACAACATCTTAGGGACACTCGTTTGTGGTTTCCACTGTTTACCTGCATGAACTGCATGATATCCTTGACCGATCGTTCCAGTTTCACAAGGCATCACTCCAAATGCCTCAGGGAACCTTTGGAAGTACTAAAAAAGCTCTCGGAGTTAAAGGAGAGAACCGAAATAAAAACTCGACTGTATCAAAACTTCAAGTGTAACAGATGCCAATTTTTATTCAGCTTCCATGAGGACTTTTGCAAACATATCGACGAGGACCACGTGTATGGTACCGCTCCATTTTATTGCTCTTGCCGCTGCATTTTTGACTCTATCGAGGACTACAAGATGCATTCATACACCTCCTGCCTGATTTCGTACTATTGCGACATTTGCTTTGTCACCACTTCAACAATTGAGGAGTTCATTCAGCACGCCCAGGCCACCCACGACGATTCCGAAGGCTTCGTTTTGCTCCAGGAGAACGCCTACATCTGCCGCGCCGGCATGTCCCGCCATAAGGAAGCCGACGATCCCAATAACGTCGTGGAAGGCAAAAGAGAACGGAAAAAGTCGCAAAAGGAACCCATACTGATCCAAGTGTATGACGATCAAATACCGCAGAACATAAAAGATATTCCTAACACAGTTATCAAGACAATGATTCAAATGGAGCCAGAGTATGCCGATTATGACAAGTGGAGTCCGGAAGTGAAAAGAACGCGCCAGTGCCGTTGTCCTGTTTGCCGGAAACAGTATTCGAGTATCGGAAATATGATAAGGCATTATCGGACCCATATAGAGCGAGGCGAAATCGAAGTGCCGTGCATGGAGTCGGAAAAAGAGGATTTGTACACTTGTCCAGAGTGCGGCGGCGTTTACCCGAAATCGAAATGGCAAGAGCATTTGGACGAGAAACATCCCAATTTGCAATGCCAAGATTGCGACAAACAGTTTCAGTTTAAAACCGATTTGGAGCAGCACAGGAGCGTGCATCTGAACTTGAAAGTTTATCGCGATTCAAAAACGGACTCTTACAAGTCGGCGATGCTCAGTCCCACTGCTGAAGAGCTGAATCCTTTAATGGAAAACGGCTTAATGGCCTGTGAAATGTGTGACGCAATGTTTGATAATCAAGAGGACTTAAAGGAACATAAGGATACTTTCCATCAGGTTAAATTAGAAAACCCTGAGGAATATTCGTATGAAAATGACACCTCTGAGATGATTCTTCCGTTGATGGTCAATAATGATGACTCCAAGTCGCAATCTTCTATGACTGATTGTATGGAAAAGCCATTTTGCGACccttgtaataaatatttttcaagttgGAAGGCTGTAAAGGATCATTCTTTTCATTACCACGGCAAAGAACTATCCAGAAAGTGGGAATATCCGCGCAAATGCGATCATTGTAGTAAAGTATGCTCCACGCCAAACGGTTTTAAGCTACATATGCTAATGCACGACAGAAATCGAAAAGGGGAATACCCGAAACAGTGCATTTATTGTGACAAAATGTGCGCCACTGGCGCCGGATATTTTAAACATGTCCAAGCCCATGAGAGAATACAAGTGGGCGACGTTAAAccaaagaaagaaaagaaagaggAAGTTTTGGGAGAACCACCAGAGGAAGAAGAGGAGTCTTATCACACGTGCAAACATTGCTTCAAAGTGTTTGCCACTAAAGGCCGCTTAAAAGACCATATGAAATGCCACGTGGGCAATAAAAAGACGAGAAAAGTCCTATGCGATCTCTGCCATACGGCTTTCGATAGTCATGAAGACTTAGAGGAGCATAAGGCGACCGAGCATGCGAATTTAGACGATATGCCCATGCTGGACAACGAATACGAGTTCGAAGCCAAAGATTTAGTTAAAATAGAAATGACTCCCGATATAATATACGCCTGTGATATTTGCGAAGCGATTTTCAATACGAAGCACGACCTCAAGGACCATAAAGAGACACATATGCCAAAGAACAAACCCGCGGGACTCACGTGCAAATATTGCAAGATCACGTTCACTTCCGTACGAGACTTGACGAAGCATATGCACGTGGAGCACGGGGAAAGTTCGAAACCCAAACACTCCAAAGCGAGATCAAAATACGTCGTGGACGAAAAACCGTTTAAGTGTCCGATTTGTAAAAAGGCGTTCGCTAGTAAGCAAGCGTTAGTGGGCCACGTCGGCTGGCACAAAAGAACCAAAACGCAACTCAAAACCGAACTGATAGAGAACACCCCGCAAGCCACCGCAGAAGCAAAAGTGTACAATAGAGAAAAAGCTCTTAATAAAACGGCGACAACCAGGAAACAAGAGCCTATAGAGCCTCCCGAGTTTCAGTGCGGCACCTGCCTAGTAGAACTACCGAACGATATCGCTTTGCAGATTCATATCCTCGAGAAGCATGGCAATTTGGATGCCACCATGCTCATCCCGAAATGTCACACGTGCAATAAAGACTTTGAAACCCAAGAGGAATACGATCAACATAAGCGCTTCCATGACTTCTTGGAACGACAGAAAAAGCACGACAAACAACAGAAAATCCAAACGCCCGTCATACAAAACATCCAGAGCCAAGGGCTCGGCGACGGCAACTTGAAAAAGTATCCATGCAACTGGTGTAATTCGGTGTTTAGTAAAGCGGAAACGTTGAACACGCACATAAACAGTCATCATAAGGATAATAATGGAGGGGGCGAGTTCAAATGTCAGGAGTGCAGCAGGGTGTTCGACAGGCAAAGTTCCTTGAACATTCATATGCAAGTACATCGGAAACGGAAGAACGCCGCGGCCCTTGAAGTCAGCCCGGGGGGGAGCAAACTTTACGTCTGTTCGTTGTGCAACATGGGATTTAACTTTCCCAAGGATCTTAGGAATCACACTTTCCACGCGCATCCGTTTTAg
- Protein Sequence
- MFGSGQNRRRHQNMLHAKKERRAKMAEIRKQKKHLPESNNKQEVNLSDDNSTKTDSQPENNVEDNSEIKSTEITSTSDSGVSKEQQNDDESTATETTIVDDKEKDDVNEAVSKNVPEDMEIDDTLGSEKGQKIGEDKSITEESDCATPISEEQEENNEVNPENQRTNEIKVEKQESNVGKTETKSTTSKNDEKKIEFAAGLHLVQKDTMGAAKPSQLSKIELSYAEKCKAMISMYQTLQCACHNVQHKQLKHLLQHLRDTRLWFPLFTCMNCMISLTDRSSFTRHHSKCLREPLEVLKKLSELKERTEIKTRLYQNFKCNRCQFLFSFHEDFCKHIDEDHVYGTAPFYCSCRCIFDSIEDYKMHSYTSCLISYYCDICFVTTSTIEEFIQHAQATHDDSEGFVLLQENAYICRAGMSRHKEADDPNNVVEGKRERKKSQKEPILIQVYDDQIPQNIKDIPNTVIKTMIQMEPEYADYDKWSPEVKRTRQCRCPVCRKQYSSIGNMIRHYRTHIERGEIEVPCMESEKEDLYTCPECGGVYPKSKWQEHLDEKHPNLQCQDCDKQFQFKTDLEQHRSVHLNLKVYRDSKTDSYKSAMLSPTAEELNPLMENGLMACEMCDAMFDNQEDLKEHKDTFHQVKLENPEEYSYENDTSEMILPLMVNNDDSKSQSSMTDCMEKPFCDPCNKYFSSWKAVKDHSFHYHGKELSRKWEYPRKCDHCSKVCSTPNGFKLHMLMHDRNRKGEYPKQCIYCDKMCATGAGYFKHVQAHERIQVGDVKPKKEKKEEVLGEPPEEEEESYHTCKHCFKVFATKGRLKDHMKCHVGNKKTRKVLCDLCHTAFDSHEDLEEHKATEHANLDDMPMLDNEYEFEAKDLVKIEMTPDIIYACDICEAIFNTKHDLKDHKETHMPKNKPAGLTCKYCKITFTSVRDLTKHMHVEHGESSKPKHSKARSKYVVDEKPFKCPICKKAFASKQALVGHVGWHKRTKTQLKTELIENTPQATAEAKVYNREKALNKTATTRKQEPIEPPEFQCGTCLVELPNDIALQIHILEKHGNLDATMLIPKCHTCNKDFETQEEYDQHKRFHDFLERQKKHDKQQKIQTPVIQNIQSQGLGDGNLKKYPCNWCNSVFSKAETLNTHINSHHKDNNGGGEFKCQECSRVFDRQSSLNIHMQVHRKRKNAAALEVSPGGSKLYVCSLCNMGFNFPKDLRNHTFHAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00117409;
- 90% Identity
- iTF_00117409;
- 80% Identity
- iTF_00117409;