Basic Information

Insect: Anthonomus grandis
Gene Symbol: -
Assembly: GCA_030068095.1
Location: CM057936.1:14278876-14282178[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.92 2.4e+02 4.7 1.7 1 21 148 168 148 169 0.93

2 19 0.93 2.4e+02 4.7 6.1 1 23 198 221 198 221 0.94

3 19 0.24 62 6.5 0.2 1 23 254 277 254 277 0.92

4 19 0.00032 0.084 15.6 2.4 2 23 372 393 371 393 0.97

5 19 0.26 67 6.4 0.1 1 22 412 432 412 434 0.82

6 19 0.00028 0.073 15.7 1.2 2 23 438 459 437 459 0.96

7 19 0.0016 0.41 13.4 0.2 3 23 496 517 494 517 0.95

8 19 3.6 9.3e+02 2.8 1.9 3 20 562 579 561 583 0.84

9 19 0.0013 0.35 13.6 4.3 2 23 596 617 596 617 0.98

10 19 1.5 4e+02 4.0 0.7 2 23 628 649 627 649 0.91

11 19 0.012 3.1 10.6 7.8 1 21 680 700 680 702 0.95

12 19 0.018 4.7 10.0 1.2 3 23 713 734 712 734 0.97

13 19 0.00025 0.065 15.9 0.7 1 23 765 787 765 787 0.97

14 19 9.7e-05 0.025 17.2 2.3 2 23 797 819 796 819 0.95

15 19 0.00026 0.068 15.8 0.1 1 23 841 863 841 863 0.92

16 19 0.017 4.4 10.2 4.2 2 23 945 966 945 966 0.97

17 19 8.2e-05 0.021 17.4 0.8 1 23 1002 1024 1002 1025 0.96

18 19 4.2e-07 0.00011 24.6 0.8 1 23 1034 1056 1034 1056 0.99

19 19 0.0054 1.4 11.7 1.6 1 23 1075 1098 1075 1098 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.92	2.4e+02	4.7	1.7	1	21	148	168	148	169	0.93
2	19	0.93	2.4e+02	4.7	6.1	1	23	198	221	198	221	0.94
3	19	0.24	62	6.5	0.2	1	23	254	277	254	277	0.92
4	19	0.00032	0.084	15.6	2.4	2	23	372	393	371	393	0.97
5	19	0.26	67	6.4	0.1	1	22	412	432	412	434	0.82
6	19	0.00028	0.073	15.7	1.2	2	23	438	459	437	459	0.96
7	19	0.0016	0.41	13.4	0.2	3	23	496	517	494	517	0.95
8	19	3.6	9.3e+02	2.8	1.9	3	20	562	579	561	583	0.84
9	19	0.0013	0.35	13.6	4.3	2	23	596	617	596	617	0.98
10	19	1.5	4e+02	4.0	0.7	2	23	628	649	627	649	0.91
11	19	0.012	3.1	10.6	7.8	1	21	680	700	680	702	0.95
12	19	0.018	4.7	10.0	1.2	3	23	713	734	712	734	0.97
13	19	0.00025	0.065	15.9	0.7	1	23	765	787	765	787	0.97
14	19	9.7e-05	0.025	17.2	2.3	2	23	797	819	796	819	0.95
15	19	0.00026	0.068	15.8	0.1	1	23	841	863	841	863	0.92
16	19	0.017	4.4	10.2	4.2	2	23	945	966	945	966	0.97
17	19	8.2e-05	0.021	17.4	0.8	1	23	1002	1024	1002	1025	0.96
18	19	4.2e-07	0.00011	24.6	0.8	1	23	1034	1056	1034	1056	0.99
19	19	0.0054	1.4	11.7	1.6	1	23	1075	1098	1075	1098	0.92

Sequence Information

Coding Sequence: ATGGCATAtcctaataattttataattgcaGGTCAAAAGATTGGTGAGGACAAATCAATAACAGAGGAATCAGATTGTGCAACGCCAATTTCtgaagaacaagaagaaaatAACGAAGTTAACCCGGAGAACCAGCGAACTAACGAAATAAAAGTGGAAAAGCAGGAAAGTAATGTAGGGAAAACGGAAACCAAGTCGACCACATCGAAAAACGACGAAAAGAAGATCGAATTCGCGGCGGGTCTTCATTTGGTCCAAAAAGACACAATGGGAGCCGCAAAACCGTCAcaattatcaaaaattgaaCTGAGTTACGCGGAAAAGTGCAAAGCGATGATTTCCATGTACCAAACGCTGCAGTGCGCCTGCCATAACGTCCAGCATAAGCAACTTAAGCACTTACTACAACATCTTAGGGACACTCGTTTGTGGTTTCCACTGTTTACCTGCATGAACTGCATGATATCCTTGACCGATCGTTCCAGTTTCACAAGGCATCACTCCAAATGCCTCAGGGAACCTTTGGAAGTACTAAAAAAGCTCTCGGAGTTAAAGGAGAGAACCGAAATAAAAACTCGACTGTATCAAAACTTCAAGTGTAACAGATGCCAATTTTTATTCAGCTTCCATGAGGACTTTTGCAAACATATCGACGAGGACCACGTGTATGGTACCGCTCCATTTTATTGCTCTTGCCGCTGCATTTTTGACTCTATCGAGGACTACAAGATGCATTCATACACCTCCTGCCTGATTTCGTACTATTGCGACATTTGCTTTGTCACCACTTCAACAATTGAGGAGTTCATTCAGCACGCCCAGGCCACCCACGACGATTCCGAAGGCTTCGTTTTGCTCCAGGAGAACGCCTACATCTGCCGCGCCGGCATGTCCCGCCATAAGGAAGCCGACGATCCCAATAACGTCGTGGAAGGCAAAAGAGAACGGAAAAAGTCGCAAAAGGAACCCATACTGATCCAAGTGTATGACGATCAAATACCGCAGAACATAAAAGATATTCCTAACACAGTTATCAAGACAATGATTCAAATGGAGCCAGAGTATGCCGATTATGACAAGTGGAGTCCGGAAGTGAAAAGAACGCGCCAGTGCCGTTGTCCTGTTTGCCGGAAACAGTATTCGAGTATCGGAAATATGATAAGGCATTATCGGACCCATATAGAGCGAGGCGAAATCGAAGTGCCGTGCATGGAGTCGGAAAAAGAGGATTTGTACACTTGTCCAGAGTGCGGCGGCGTTTACCCGAAATCGAAATGGCAAGAGCATTTGGACGAGAAACATCCCAATTTGCAATGCCAAGATTGCGACAAACAGTTTCAGTTTAAAACCGATTTGGAGCAGCACAGGAGCGTGCATCTGAACTTGAAAGTTTATCGCGATTCAAAAACGGACTCTTACAAGTCGGCGATGCTCAGTCCCACTGCTGAAGAGCTGAATCCTTTAATGGAAAACGGCTTAATGGCCTGTGAAATGTGTGACGCAATGTTTGATAATCAAGAGGACTTAAAGGAACATAAGGATACTTTCCATCAGGTTAAATTAGAAAACCCTGAGGAATATTCGTATGAAAATGACACCTCTGAGATGATTCTTCCGTTGATGGTCAATAATGATGACTCCAAGTCGCAATCTTCTATGACTGATTGTATGGAAAAGCCATTTTGCGACccttgtaataaatatttttcaagttgGAAGGCTGTAAAGGATCATTCTTTTCATTACCACGGCAAAGAACTATCCAGAAAGTGGGAATATCCGCGCAAATGCGATCATTGTAGTAAAGTATGCTCCACGCCAAACGGTTTTAAGCTACATATGCTAATGCACGACAGAAATCGAAAAGGGGAATACCCGAAACAGTGCATTTATTGTGACAAAATGTGCGCCACTGGCGCCGGATATTTTAAACATGTCCAAGCCCATGAGAGAATACAAGTGGGCGACGTTAAAccaaagaaagaaaagaaagaggAAGTTTTGGGAGAACCACCAGAGGAAGAAGAGGAGTCTTATCACACGTGCAAACATTGCTTCAAAGTGTTTGCCACTAAAGGCCGCTTAAAAGACCATATGAAATGCCACGTGGGCAATAAAAAGACGAGAAAAGTCCTATGCGATCTCTGCCATACGGCTTTCGATAGTCATGAAGACTTAGAGGAGCATAAGGCGACCGAGCATGCGAATTTAGACGATATGCCCATGCTGGACAACGAATACGAGTTCGAAGCCAAAGATTTAGTTAAAATAGAAATGACTCCCGATATAATATACGCCTGTGATATTTGCGAAGCGATTTTCAATACGAAGCACGACCTCAAGGACCATAAAGAGACACATATGCCAAAGAACAAACCCGCGGGACTCACGTGCAAATATTGCAAGATCACGTTCACTTCCGTACGAGACTTGACGAAGCATATGCACGTGGAGCACGGGGAAAGTTCGAAACCCAAACACTCCAAAGCGAGATCAAAATACGTCGTGGACGAAAAACCGTTTAAGTGTCCGATTTGTAAAAAGGCGTTCGCTAGTAAGCAAGCGTTAGTGGGCCACGTCGGCTGGCACAAAAGAACCAAAACGCAACTCAAAACCGAACTGATAGAGAACACCCCGCAAGCCACCGCAGAAGCAAAAGTGTACAATAGAGAAAAAGCTCTTAATAAAACGGCGACAACCAGGAAACAAGAGCCTATAGAGCCTCCCGAGTTTCAGTGCGGCACCTGCCTAGTAGAACTACCGAACGATATCGCTTTGCAGATTCATATCCTCGAGAAGCATGGCAATTTGGATGCCACCATGCTCATCCCGAAATGTCACACGTGCAATAAAGACTTTGAAACCCAAGAGGAATACGATCAACATAAGCGCTTCCATGACTTCTTGGAACGACAGAAAAAGCACGACAAACAACAGAAAATCCAAACGCCCGTCATACAAAACATCCAGAGCCAAGGGCTCGGCGACGGCAACTTGAAAAAGTATCCATGCAACTGGTGTAATTCGGTGTTTAGTAAAGCGGAAACGTTGAACACGCACATAAACAGTCATCATAAGGATAATAATGGAGGGGGCGAGTTCAAATGTCAGGAGTGCAGCAGGGTGTTCGACAGGCAAAGTTCCTTGAACATTCATATGCAAGTACATCGGAAACGGAAGAACGCCGCGGCCCTTGAAGTCAGCCCGGGGGGGAGCAAACTTTACGTCTGTTCGTTGTGCAACATGGGATTTAACTTTCCCAAGGATCTTAGGAATCACACTTTCCACGCGCATCCGTTTTAg
Protein Sequence: MAYPNNFIIAGQKIGEDKSITEESDCATPISEEQEENNEVNPENQRTNEIKVEKQESNVGKTETKSTTSKNDEKKIEFAAGLHLVQKDTMGAAKPSQLSKIELSYAEKCKAMISMYQTLQCACHNVQHKQLKHLLQHLRDTRLWFPLFTCMNCMISLTDRSSFTRHHSKCLREPLEVLKKLSELKERTEIKTRLYQNFKCNRCQFLFSFHEDFCKHIDEDHVYGTAPFYCSCRCIFDSIEDYKMHSYTSCLISYYCDICFVTTSTIEEFIQHAQATHDDSEGFVLLQENAYICRAGMSRHKEADDPNNVVEGKRERKKSQKEPILIQVYDDQIPQNIKDIPNTVIKTMIQMEPEYADYDKWSPEVKRTRQCRCPVCRKQYSSIGNMIRHYRTHIERGEIEVPCMESEKEDLYTCPECGGVYPKSKWQEHLDEKHPNLQCQDCDKQFQFKTDLEQHRSVHLNLKVYRDSKTDSYKSAMLSPTAEELNPLMENGLMACEMCDAMFDNQEDLKEHKDTFHQVKLENPEEYSYENDTSEMILPLMVNNDDSKSQSSMTDCMEKPFCDPCNKYFSSWKAVKDHSFHYHGKELSRKWEYPRKCDHCSKVCSTPNGFKLHMLMHDRNRKGEYPKQCIYCDKMCATGAGYFKHVQAHERIQVGDVKPKKEKKEEVLGEPPEEEEESYHTCKHCFKVFATKGRLKDHMKCHVGNKKTRKVLCDLCHTAFDSHEDLEEHKATEHANLDDMPMLDNEYEFEAKDLVKIEMTPDIIYACDICEAIFNTKHDLKDHKETHMPKNKPAGLTCKYCKITFTSVRDLTKHMHVEHGESSKPKHSKARSKYVVDEKPFKCPICKKAFASKQALVGHVGWHKRTKTQLKTELIENTPQATAEAKVYNREKALNKTATTRKQEPIEPPEFQCGTCLVELPNDIALQIHILEKHGNLDATMLIPKCHTCNKDFETQEEYDQHKRFHDFLERQKKHDKQQKIQTPVIQNIQSQGLGDGNLKKYPCNWCNSVFSKAETLNTHINSHHKDNNGGGEFKCQECSRVFDRQSSLNIHMQVHRKRKNAAALEVSPGGSKLYVCSLCNMGFNFPKDLRNHTFHAHPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00117418;
90% Identity: iTF_00117418;
80% Identity: iTF_00117418;