Agra041269.1
Basic Information
- Insect
- Anthonomus grandis
- Gene Symbol
- egg
- Assembly
- GCA_030068095.1
- Location
- CM057944.1:16774707-16796833[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4 4.2e+04 -3.6 0.0 34 44 504 514 503 529 0.76 2 2 7.4e-16 1.3e-11 46.1 0.0 4 74 790 853 787 856 0.89
Sequence Information
- Coding Sequence
- ATGGATATTGAAGAAGGTGATGATGCTATGGACATTGATGAACCTGTTCCTGTCACCCCAATAATTGAACGAAAGCTAAATGAGTTCCCTACTGAAAACTCTGATCCTAATGCTTCAATATCTCACAATGAGATTACATCTACCACTTATGGAACTCCCGTATCCAGTAGATTACAGGGCTCAGAAAATAGAGTCTCTGAGGGgAATTCAATAATAACAGATTCCGTCCCAACCTCAGAACCAAGCATAGTTATTTTGGATGATGAAGATGAAAAATTGAATGTATCTTCCACTAGTGAACAAAATTCACAAGAAATTACTGGCAAAAAAGAAGTTGGTCTGCAGGAACATGAAAACAGATGCTTCAACAAACAATGCAAAAGAATGTCATCCCAATTTATTTCTGCATCTGATATATGTCTTGCATTTTTtcaGGTACCAAGAGTAGAAAATAAGGATATGGAAATCTGTACCACATGTTATGCATTCTTCTTAAAGAACAACAAAAAGCCTATTAGAATTAATGaacctGTAAAAGATATAATTGATTTGGTAGACAAACCTAAAAACAGTAACAGATGCATTAATACTAATTGTATGGGGAATAgcttgaaatttatttatgcaCCGGATTTCTGTTTGTCTTATTTCAGagtAAAGAGATCTTATGGTAATAGAGAAGAGATTTGTATGGATTGTTATGAACTGTCCGTCATAGATAATGACAAGTTAGCAGAAAGCCTAATTAAAGGTAATCTACTATTTGAAGTTGACTTTCCAATAATTAATGAAACCCTCCAAATTGATGATTCGGATGAAGAGGACGAAGACGAGAACCAACTGGAGGAATTTATTCCTTTatcaaatttagattttattgctGATAATATTGATTCAGTGCTTGAAGAAACTATTGAAAAGCTCGGACTTAAAAACCACTTAGAGAAGGAGAGAAAATATCTCAAAGACGTAGCTGATAAAGTTGCAAAGAGTTCCGAGGAGTTAGTTAAAGAAGTTAACGAAATCAGACTCTCATTAGACACTATACAATTAGATTTATATAGCCATTTCAGACCTGAGTTTAGAAATTTGAAGGGTATTATGATTTTGGACGATTATTCTTTGAGTCCGACACTGCAAATTCGTCCAGaaaacaATCCGCCATCAGACTCAATCCAGAGGAAGAGCAATAGAATAGTACAAAAGCCAATTGTGAAGGAAGATATTGCAACACCATTATCAAAGGAAACTACTCAAGGTAATCCTGGAATAGTGGAGATACCTAAAGATTTGCCAGTCAGTCTGGTAGTGGATAAACCAGTACCACAAATTGatGGTCTATACTACATtgcaaaagaaaacaatatCCAAGGCTGTTGGATCAAGGCAAGGCTACAGCAAATCATTCAACCAAATACCACATACAAAGGTCAGTTGTATACTGAACTTAGCTATAGATTAACTGAACTCAAACAGCAGAAAGAGAGGATTGTTACTGGAAAATACCTAGcttaTATAAATCCTTGCAGATCACGCCTAACTGTAGGAACTAGAGTTCTTTCAGTGTTTAAGGAAACCAATCGAATTCCGGGTACAAAAATTGCCAGGTCTGATCCCTATTATGCTGGAATTGTAGGAGAAAATCCAGTAGAGTCTAATTTTTACAgatatttgatattttttgatattggATATGCTCAGTACGTAAATCATCATGGAATCAATTTAGTGTTCGAAGCTGATGCGCAGGTGTGGAAGGATATGCCAGAAGATTCTAGGCcctttatacaaaaatatttggaaagcCAGGACAGGCCTATGGTTAAGTTGATTCCTGGTCAAACTGTTAGAGTGGAATATAatggtaaatgGTGGCTGTGCACGATAAAACACGTCGATTGTTCCCTAGTGAAGGTTTATTTCGACCAAATAAACAGGTGGGAATGGATTTATCGTGGCTCGACCAGATTAAGTCCTATGTACAGGGAGGAATTGGCTGCTTCTACTAGACACACTGGCATACGAACTCCTAGAAAACTTGGACCTaacGAATCTTCTGCGGTAGTTCAATATAGTCGAAACGAGGAATTTGTTCAGTCTTctcaaaaagaaaatacacCGCCTAGTGAAACTAGAGCTGTCGCGCGTAAGAGTACTACCAAACCTAATAGCGTTAACCAACCCGCACCGAAAGCGGTGCGATTTTTACCTCCTATTCAGCCGACATCGAACGCTTCAGGACCTACGAGTAAGATTAtgtattttactCCAAGAGACCAACAAGTAACCCGACAGGAGTATAAACTTCACGAATGTGGCCCAATGTGTAAAACATTTATTACCCACAACTTTACCAAACTGCGAGGACATAATCCGCTCTCGAAACCTTTGTTGTGTGGCTGGGCAAGAATGACTTTAAAGGACCGAGGAAGAAAGGAGATTATTTATAAGGCGCCTTGTGGAAGGATGATTAGAAACATTAGCGAGatacaCTATTATCTTAGAGTGACCGAAAGCGAAATGACAGTGGACTTATTCGATTTTAATCACATGGTTAGGTGCCTGGCAGAATTTAGTGTAGACTGTGTACCTGATCCAAAAGATTTATCGAAGGGTGTTGAGCAAGTTCCAATTCCCGTTATTAATGGGTTAAGTACCGAGGCGCTAGATTTCTGGAATTATTCTATAACGCGGATTCCTACAGACGGGGTACTTCTTAACGTTGACGAAGAGTTTCTATGTGGGTGTGACTGTGAAGACGATTGTGTGgataaACTAAAATGTGCATGTTGGAAGCTTACTCTGGAAGGAATCAAATTTTTAGCAAAAGATACCGATCCAATTTCTGTTGGTTATATTTATCGAAGGTTGCAGGAGCAAGTAATTACTGGAATTTATGAGTGCAATTcaaggtaa
- Protein Sequence
- MDIEEGDDAMDIDEPVPVTPIIERKLNEFPTENSDPNASISHNEITSTTYGTPVSSRLQGSENRVSEGNSIITDSVPTSEPSIVILDDEDEKLNVSSTSEQNSQEITGKKEVGLQEHENRCFNKQCKRMSSQFISASDICLAFFQVPRVENKDMEICTTCYAFFLKNNKKPIRINEPVKDIIDLVDKPKNSNRCINTNCMGNSLKFIYAPDFCLSYFRVKRSYGNREEICMDCYELSVIDNDKLAESLIKGNLLFEVDFPIINETLQIDDSDEEDEDENQLEEFIPLSNLDFIADNIDSVLEETIEKLGLKNHLEKERKYLKDVADKVAKSSEELVKEVNEIRLSLDTIQLDLYSHFRPEFRNLKGIMILDDYSLSPTLQIRPENNPPSDSIQRKSNRIVQKPIVKEDIATPLSKETTQGNPGIVEIPKDLPVSLVVDKPVPQIDGLYYIAKENNIQGCWIKARLQQIIQPNTTYKGQLYTELSYRLTELKQQKERIVTGKYLAYINPCRSRLTVGTRVLSVFKETNRIPGTKIARSDPYYAGIVGENPVESNFYRYLIFFDIGYAQYVNHHGINLVFEADAQVWKDMPEDSRPFIQKYLESQDRPMVKLIPGQTVRVEYNGKWWLCTIKHVDCSLVKVYFDQINRWEWIYRGSTRLSPMYREELAASTRHTGIRTPRKLGPNESSAVVQYSRNEEFVQSSQKENTPPSETRAVARKSTTKPNSVNQPAPKAVRFLPPIQPTSNASGPTSKIMYFTPRDQQVTRQEYKLHECGPMCKTFITHNFTKLRGHNPLSKPLLCGWARMTLKDRGRKEIIYKAPCGRMIRNISEIHYYLRVTESEMTVDLFDFNHMVRCLAEFSVDCVPDPKDLSKGVEQVPIPVINGLSTEALDFWNYSITRIPTDGVLLNVDEEFLCGCDCEDDCVDKLKCACWKLTLEGIKFLAKDTDPISVGYIYRRLQEQVITGIYECNSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -