Agra049743.1
Basic Information
- Insect
- Anthonomus grandis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_030068095.1
- Location
- CM057947.1:7070788-7098693[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.2e-49 2e-44 154.4 13.3 1 155 71 226 71 236 0.81 2 3 3.6e-49 3.1e-44 153.7 11.1 124 300 259 424 249 424 0.90 3 3 0.017 1.5e+03 0.5 0.1 120 162 422 464 422 466 0.88
Sequence Information
- Coding Sequence
- ATGGACACTGGTGATAACTGCAACTGTGATATTGCCCAGGAATCTAATAACAATATCACGAAGAATAATGATACGATTGAAGTTGAAACGAATTTTGTGGATGATACAGCTTATTACAGCTGCAACTGGTCTGTGAGCAATATAAATAATAGCAGTTTTATTGATGACAGTGAtgttattaatagttttatggAAGCTTCAAGTGAGGATGCGGAGGCAAGGCTAAAAGCAAAACGCCAAGCCAGAGCGGAGGCGCGGGAGATTCGCATGCGCGAACTGGAGCGCATTCAACGCGAACAAGAAGAAAACGCAGATAGACAATTTGACATGATGGTATCGGCAGGGGCAGATCCCGTTTGGGGAGTGCGGCCTAAACCCACTTCTACTGTGAGGCATCGGCCTGCCAGCCGAAGAAACTCCGAGGACTCGCTCGAAGATGGGTCAGGGGGAGGAGGAAGTTTAAGGGATCTGAGGGCAGAACTTAAAGACGTCGAGGATAGATTTAGGAAAGCTATGATAGCTAATGCCCAGTTAGACAATGACAAAGCAGCTCAGTCTTATCAATTAGAACTACTTAAAGATAGGCTTGAGGCAAGCGAATCGGACCAAGAAGAGTTTGATCAAGCTGGAGATGCTGCAGAGACAAGCTCCAACTACAAACAAACCAGAACAGCCACGAAAAAAACGAGAGAGGAGAGTGGTGTTCTGCCTTGCTTACACTGGGCGAGAGATGGCTGCCCTTCGAAACGGCTAGCCCTGAATTCCACCCTACCAAAGAGCTTGCTTGAAGAATTAGAGGAAGAAAACTCTCAACTAAAAAGAGAGCATCGAGATAAATGCAGGGAACATGAACAATTAAAAAGATTATGCCAGCAGCTCAAAGATGACCTGCGGCTCTATAAACTAGAGCTGGAAGAACGAGATAGGTTAATAGAAGAAAAAGGATTGGTAATAGTATGTGGGGATCCGGGGGAAAACGGGGAACCCCCTAAAAAAGCTTTAGTTCAAGCCGAGAACGCAAGGTTATTAGAAGGTGGAGACGGTAGCTTAGatgtACGATTAGCGCATTTAGCGAAAGAGAAAGGGGAGTTAGAAGATGAAATTAGCAGTTTAAAGTTAGAACTGGAGGAAGAGAGAAGTAGAAGAAGGAAATCTAGTAGTTTGCTGAACGGACCTTCTGATTATGACCCCGATGACCTACAACgggAAGCTAGTAAACAATTGGCAGACTACAAATTTCGCGCTCAAAAAGCTGAGCAAGACGTGGCGACGCTACAAGCGACCGTGGCTAGACTGGAGACGCAGGTTATCCGGTATAAAACGGCCGCAGAGATCTCTGAGCAGTCTGAGGAAGCCTTAAAAGCCGAAAAGAGGAAACTGCAACGAGAGGTAAGCAATTGA
- Protein Sequence
- MDTGDNCNCDIAQESNNNITKNNDTIEVETNFVDDTAYYSCNWSVSNINNSSFIDDSDVINSFMEASSEDAEARLKAKRQARAEAREIRMRELERIQREQEENADRQFDMMVSAGADPVWGVRPKPTSTVRHRPASRRNSEDSLEDGSGGGGSLRDLRAELKDVEDRFRKAMIANAQLDNDKAAQSYQLELLKDRLEASESDQEEFDQAGDAAETSSNYKQTRTATKKTREESGVLPCLHWARDGCPSKRLALNSTLPKSLLEELEEENSQLKREHRDKCREHEQLKRLCQQLKDDLRLYKLELEERDRLIEEKGLVIVCGDPGENGEPPKKALVQAENARLLEGGDGSLDVRLAHLAKEKGELEDEISSLKLELEEERSRRRKSSSLLNGPSDYDPDDLQREASKQLADYKFRAQKAEQDVATLQATVARLETQVIRYKTAAEISEQSEEALKAEKRKLQREVSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -