Agra021810.1
Basic Information
- Insect
- Anthonomus grandis
- Gene Symbol
- tfip11
- Assembly
- GCA_030068095.1
- Location
- CM057939.1:23275243-23277732[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-91 7.2e-87 293.7 14.0 1 275 398 664 398 664 0.98 2 2 0.046 2e+03 0.3 0.3 241 272 675 706 667 711 0.70
Sequence Information
- Coding Sequence
- ATGGAGGATGAAATGGAACGTTTTGAAATCACAGATTATGATCTAGAAAATGAGTTTACAATCAAACATAGAAAAGGCCTAAGTAAGCATCAGCAAATCTATGGTATATGGGCGGATGACAGCGATGAAGATTCCGGTGAAAAGAAGCACAATAGGAGCAGCAAAAAGCCTAAAAACTATTCAGCCCCTATTGGGTTTGTCACAGGTGGTGTACAACAAGCAGGCAAGAAAGAGAAGCTAAAAGAGGAGGAGAAAATGGAAGATGATAATTCAGATATTGATGAAAAACCAAGTACATCTTTTAATATGCAAAGGAGTTCAGATTCTGAAGAAGAAATGCCTTCGAGAATTGGATTTGGATCTTCTCGCAAATCTTCCCAGCCACCACAACAATCCACAGTAACAGAAGTCATTTCTGATATTGCTGGGTTTAGAACAAGAAACAAAGTAGATCCCTCATTAATAAACCAAGGAATGGGTAACTGGGAAAAGCACACTAAGGGAATAGGAGCAAAGTTACTTCTTCAGATGGGGTATGAGCCAGGAAAAGGTCTCGGCAAAGACCTGCAGGGCATATCTGCACCTGTACAGGCACATCTGCGGAAAGGTAGGGGTGCTATAGGAGCTTATGGTCCAGAAAAAAGTGCTAGTGTCCCAAAACTGAAGGCTGAAGATGTAAAAGTTCAAGAAGAACAAGGCAAAGGATCCTCTAGATGGAATAAAGCTGATGTTGGTGGAAAAAACACCCGCTATTATTATAGGAGTGTAGATGATGTTATTGAAAAGGGCAAAAAACCCGGATATAATTTAGGTTCATCTAGTGAAATGACAAAAGTAAAAGTGATAGACATGACTGGGCCACAACAGAGGGTCCTTAGTGGTTATCATGCACTTAGTGGTCTTAAAGCACCGCCAGGAGTCGAGCATTTTGAAGATGTTGTGcacaaaaaatgccaaaattttgCCTTACCTGAAATCCAACATAATCTGGATCTTTTAGTGGATATGTGTGAACAGGAGATTATAAGGGTGGATAGAGATAGTAGGCATGTACAAGATAAAATTGTAGCACTAAAACAGGAGAAAGTTTCTCTACAAGACACAATTATGCAAGAAGAAAAACTAGTTGACAAACTAAAATATGTGTTGGATATAGTGGACAGGTTATTGGACCCTTCTCAGGACTACTCATTGGGCCAAATTGGGGAGATTTTCTTAAGATTGTCTAAAGACTATCCAGAAGAATATAGTCGCTATGAGTTAGCAGAACTTGCTCCAGGTTTAGTTGGTCCACTTTTAACATCAGCATTAGCAAATTGGAATCCATTAGAACAACCAAGCCAATATATGGACTTTTTCAAGCAATGGCAGAATATATTGAGTGAGAAAAAAGATGGAAATAAGGTGGGAATATTGCCTTATGATAGTGTTTTATGGCATACTTGGGTGCCTGTGCTGAGGACTTGTATTACTAATTGGAAACCAAGAGATTGTGACCCTATGATTGCACTTATAGAAGCCTGGAAGCCAATTTTGCCGGTCTGGATTCTAAATAACACCTTTGATCAAATGATTATGCCTAGGATTTTAAAGGAGGTAAAGGATTGGAATCCTTTGACAGACACCATTCCAATACATTTGTGGATTCACCCATGGATACCTATTTTAAATGATAGACTGCAAGAAAAAGTTTATCCAGTAATTCAAGAAAAACTAGGAACAGCTTTGAGTGGTTGGCATCCATCAGATGGCTCTGCAAAGCTTATGCTTCTTCCTTGGCAAAGGGCTTTATCACAGGGAACATTCATGGCATTCTTGTGCAAACATATTGTACCCAAATTACAGGAATGTATGCAGTCCATGGTTATTAATCCTCACCAGCAGCTTCTGGACCCCTGGCAGTGGGTGATGAACTGGAAAGATATGTTATCTGTGCCAAATATAACTTTGATTTTGGACAAGTTCTTCTTTCCCAGATGGTTGCAGACACTGGCAATGTGGCTTAATCAAAATCCCAACTACACTCAAGTAACAGAATGGTACTTGGGTTGGAAAAGAATGCTTTCAGAAGACTTACTAACTCAACCAACAATAAAAGAGAGTTTCCATAAAGCTTTGGAAATGATGAACAGAGCTGTCGGTTTGATTCAACAACCAGGAGCGAAAGAATCAATCTCATATTTGTCTAATAATGAATTGAATACTACTCCACTACCTCCTCCCCCTCCTAAGATTGATAGTATAGCAGAAGCTGTAAGGACAGCTGCAAAGATACCACAAGGGTTTAAGGATTTGGTAATGAAAAGATGTGAAGAGAGAGGTATTCTATTTGTtccaatacaaaataaatatcatgAAGCCAAGCAGGTTTATAGAATTGGTTCAAATGGAGTGCAGTGTTATATTGATAggaatgttattttttacaGTCAAAATAGTCCTACATGGATACCAACTTCTCTTAATAGATTACTGgatatttcttcttaa
- Protein Sequence
- MEDEMERFEITDYDLENEFTIKHRKGLSKHQQIYGIWADDSDEDSGEKKHNRSSKKPKNYSAPIGFVTGGVQQAGKKEKLKEEEKMEDDNSDIDEKPSTSFNMQRSSDSEEEMPSRIGFGSSRKSSQPPQQSTVTEVISDIAGFRTRNKVDPSLINQGMGNWEKHTKGIGAKLLLQMGYEPGKGLGKDLQGISAPVQAHLRKGRGAIGAYGPEKSASVPKLKAEDVKVQEEQGKGSSRWNKADVGGKNTRYYYRSVDDVIEKGKKPGYNLGSSSEMTKVKVIDMTGPQQRVLSGYHALSGLKAPPGVEHFEDVVHKKCQNFALPEIQHNLDLLVDMCEQEIIRVDRDSRHVQDKIVALKQEKVSLQDTIMQEEKLVDKLKYVLDIVDRLLDPSQDYSLGQIGEIFLRLSKDYPEEYSRYELAELAPGLVGPLLTSALANWNPLEQPSQYMDFFKQWQNILSEKKDGNKVGILPYDSVLWHTWVPVLRTCITNWKPRDCDPMIALIEAWKPILPVWILNNTFDQMIMPRILKEVKDWNPLTDTIPIHLWIHPWIPILNDRLQEKVYPVIQEKLGTALSGWHPSDGSAKLMLLPWQRALSQGTFMAFLCKHIVPKLQECMQSMVINPHQQLLDPWQWVMNWKDMLSVPNITLILDKFFFPRWLQTLAMWLNQNPNYTQVTEWYLGWKRMLSEDLLTQPTIKESFHKALEMMNRAVGLIQQPGAKESISYLSNNELNTTPLPPPPPKIDSIAEAVRTAAKIPQGFKDLVMKRCEERGILFVPIQNKYHEAKQVYRIGSNGVQCYIDRNVIFYSQNSPTWIPTSLNRLLDISS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00847663;
- 90% Identity
- -
- 80% Identity
- -