Agra005656.1
Basic Information
- Insect
- Anthonomus grandis
- Gene Symbol
- -
- Assembly
- GCA_030068095.1
- Location
- CM057936.1:46878374-46879003[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.1e-09 5.3e-07 31.5 0.0 3 40 20 57 18 62 0.86
Sequence Information
- Coding Sequence
- ATGCAGAGAGTTTATAAGAGAAAAGTTGGGGCACGAAGGTACAAAGACTACGGTCAAGAGTCCATAGAAAAAGCGTTAGAAAAGGTCATAAATGAAGGGTGGAGTTTACGCAAAGCTGCAAAATGGTTCCAGATTTCTTACGGGACCTTAAATACTAGATACCATGGGCGTCATGTTAAAAGTAATGGCGGGCAAACCGTTTTTAGCTCCAATGAAGAGCAATCAATTCTTAAATGTGTTGCTATTTGTGGCGAATGGGCGTTTCCtcttaatttaacagatttaaggcATATGCCAAAAAACCTGCTAGATACCCAAGGTCGTTCAGTGGCAAAATTTAAGGACAATTTACCCGGTACCGATTGGGTATTTTCGCTGTTAAAAAGACATAACAATGTAATAACTCAAAGGCTTGCAGCTAATATTAAAAGGGCTCGTGCTGATGTTTCCAGGCAAACattaactgaatattttgaaaaccttaaaacaactttaaatggtATTCCGTCATGCAACGTATATAATTATGATGAAACTAATTTGCTTGACGACCCTGGgcgcaaaaaattaatatattcccGTGGAGTAAAATACCAATGTGCAATTTTACTAAATCTGCAACCTCAGTGA
- Protein Sequence
- MQRVYKRKVGARRYKDYGQESIEKALEKVINEGWSLRKAAKWFQISYGTLNTRYHGRHVKSNGGQTVFSSNEEQSILKCVAICGEWAFPLNLTDLRHMPKNLLDTQGRSVAKFKDNLPGTDWVFSLLKRHNNVITQRLAANIKRARADVSRQTLTEYFENLKTTLNGIPSCNVYNYDETNLLDDPGRKKLIYSRGVKYQCAILLNLQPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00115936;
- 90% Identity
- iTF_00115891;
- 80% Identity
- -