Agra058169.1
Basic Information
- Insect
- Anthonomus grandis
- Gene Symbol
- -
- Assembly
- GCA_030068095.1
- Location
- CM057950.1:4813163-4813807[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.5e-09 1.8e-07 32.9 0.0 2 40 19 57 18 62 0.90
Sequence Information
- Coding Sequence
- ATGCCGAGAGTTTATAAGAGAAAAGTTGGGGCACAAAGGTACAAAGACTACGGTCATGAGTCCATAGAAAAAGCGTTAGAAAAGGTCATAAATGAAGGATGGAGTTTACGCAAAGCTGCAAAATGGTTCAAGATTTCTTACGGGACCTTAAATAATAGATACCATGGGCGTCATGTTAAAAGTAACGGCGGGCAAACCGTTTTTAGCTCCAATGAAGAGCAATCAATTCTTAAATGTGTTGCTATTTGTGGCGAATGGGGGTTTCCtcttaatttaacagatttaaggcATATGGCAAAAAACCTGCTAGATACCCAAGGTCGTTCAGTGGCAAAATTTAAGGACAATTTACCCGTTACCGATTGGGTATTTTCGCTGTTAAAAAGACATAACAATGTAATAACTCAAAGGCTTGCAGCTAATATTAAAAGGGCTCAGGTATATAATTATGATGAAACTAATTTGCTTGACGACCCTGGGcacaaaaaactaatatattcccGTGGAGTAAAATACCCTGAACGAGTGTGCAATTTTACTAAATCTGCAACCTCAGTGATGATGTGTGGTTCTGTAGCAGGAGTTCCTTTGCCACCATATGTAATTTATCGAGCAGAAAAAATGTGGGCGCAGTGGACTGAATAA
- Protein Sequence
- MPRVYKRKVGAQRYKDYGHESIEKALEKVINEGWSLRKAAKWFKISYGTLNNRYHGRHVKSNGGQTVFSSNEEQSILKCVAICGEWGFPLNLTDLRHMAKNLLDTQGRSVAKFKDNLPVTDWVFSLLKRHNNVITQRLAANIKRAQVYNYDETNLLDDPGHKKLIYSRGVKYPERVCNFTKSATSVMMCGSVAGVPLPPYVIYRAEKMWAQWTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00116022; iTF_00116324; iTF_00116428; iTF_00115953; iTF_00116305; iTF_00115988; iTF_00115992;
- 90% Identity
- -
- 80% Identity
- -