Agra064410.1
Basic Information
- Insect
- Anthonomus grandis
- Gene Symbol
- -
- Assembly
- GCA_030068095.1
- Location
- CM057952.1:11140974-11141475[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.4e-10 4.8e-08 34.8 0.0 6 39 23 56 20 58 0.87
Sequence Information
- Coding Sequence
- ATGCCCAATAAAtatatccgaaaacaaaacACACCTAAAAGAGGTTCTTGGACGGCTAGAGCATTAGGTGATGCAGTTGATGCTGTGAAGAATAGCGGTATGAGCATTAACGAAGCCGCGAAAGCATTTGGGATctcaaaaacaacttttaagcGCAGATTAGAAGCAAATAACATCGATAGCTGTAATCGTCTGGGGCCAGATTGTTCTTTGGGCTCGAGCgCAGGCTTTGCACCCACCAGAACAGAAGTAAGAATCATGGCGTTTAATTTAGCTGAACGATTGGggattccaaataaatttaataaaaaagaagGTAAAGCTAGCCAAAAATGGTTAGAACTGTTTTTAAAGCGAAGACCTGAAATTTCAATCAGAAAATCCGAGAACACCTCAATTGCGTGA
- Protein Sequence
- MPNKYIRKQNTPKRGSWTARALGDAVDAVKNSGMSINEAAKAFGISKTTFKRRLEANNIDSCNRLGPDCSLGSSAGFAPTRTEVRIMAFNLAERLGIPNKFNKKEGKASQKWLELFLKRRPEISIRKSENTSIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00115682; iTF_00116206; iTF_00115686; iTF_00115661; iTF_00116018; iTF_00115827;
- 90% Identity
- -
- 80% Identity
- -