Agra069380.1
Basic Information
- Insect
- Anthonomus grandis
- Gene Symbol
- -
- Assembly
- GCA_030068095.1
- Location
- CM057954.1:10618534-10619067[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.8e-12 1.4e-10 43.0 0.0 6 39 23 56 20 59 0.91
Sequence Information
- Coding Sequence
- ATGCCCAATAAAtatatccgaaaacaaaacgcACCTAAAAGAGGTTCTTGGACGGCTAGAGCATTAGGTGATGCAGTTGATGCTGTGAAGAATGGCGGTATGGGCATTAACAAAGCCGCGAAAGCATTTGGGATcccaaaaacaacttttaagcGCAGATTAAAAGCAAATAACATCGATAGCTGTAATCGTCTGGGGCCAGATTGTTCTTTGGGCTCGAACGTCGAAACAAAAATAGTCAGTCAcataaaaaaactgcaaaaggCAGGCTTTGCACCCACCAGAACAGAAGTAAGAATCATGGCGTATAATTTAGCTGAACGATTGGggatttcaaataaatttaataaaaaagaagGTAAAGCTGGCCAAAAATGGTTAGAACTGTTTTTAAAGCGAAGACATGAAATTTCAATCAGAAAATCCGAGAACACCTCAATTGCGCGCGCGAGCTTTGGGAATGTCAAGAGAAACCGTTAA
- Protein Sequence
- MPNKYIRKQNAPKRGSWTARALGDAVDAVKNGGMGINKAAKAFGIPKTTFKRRLKANNIDSCNRLGPDCSLGSNVETKIVSHIKKLQKAGFAPTRTEVRIMAYNLAERLGISNKFNKKEGKAGQKWLELFLKRRHEISIRKSENTSIARASFGNVKRNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00115826;
- 90% Identity
- iTF_00115769;
- 80% Identity
- -