Agra038843.1
Basic Information
- Insect
- Anthonomus grandis
- Gene Symbol
- clz9
- Assembly
- GCA_030068095.1
- Location
- CM057943.1:27302429-27304275[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.8e-13 3.5e-11 44.8 0.2 7 44 24 61 19 62 0.94
Sequence Information
- Coding Sequence
- ATGCcgagaatttacaaaaaaaaattggggccgCAGGGAAAATGTAACTACGATCAAGAATATGTTCGTCGAGCAGTGGCAGCGGTTAGACGAGGTGATATGTCCATGAGACAAGCATCTGAAAGATTTGGTGTACCTTTCAGTACCATTCAAAGAAGATATCATGgcaaacattctttaaaatatggtCGACAGCCTGTACTAAGTGGTGAGCAAGAGCTAAGACTAAAGGAGACAATCAAAATTTGCGCCGACTGGGGATTCCCATTAAAAAGTACAGATGTTAGAGCAATTGTGCAACAATATCTAAATAGACTAGGAGTAAGGGATtccagatttaaagaaaatatgccaGGGATGGACTGGTTCAAAAGTTTTATGAGCAGAAATAAAGACCTTACCGTTAAGTTGGCTGAAAATACAAAACGCGTTAGAGGTGCATTAACCCGCGaggttattcaaaaatattttgaaaacttgcaGGTCACGTTGAAAGACGTCCCTGctcaaaatattatcaattacgACGAGACCAATTTTGTGGATGATCCCGGGTCGGCTAAAGTAATTACAAAAAGAGGTGCAAAGCATGCCCATAGGTTAATAGACTCCTCAAAGACCAGCACAACTGTGATGTTTGCAATAGCCGCTGATGGAACATTACTGCCTCCATATACGGTATACAAGGCAAAACATTCCTATGATGGTTGGACAGAGGGAGGAATTGAAGGAGCAAGATATAACAGAAGCATGAGTGGATGGTTTGACTCTGATATATTTGAGGACTGGTTTAAGACAATTGTCATGCTTTATTTTCGAAAGCTTGCTGAGCGTAAAGTTTTAATAGGCGATAACTTAAATTGCCACATTACCACTAATGTCGTACAGCAATGTGAGaataatgaaattgattttgtcTTACTCCCTCCCAATTCAACTCATTTGCTTCAACCGCTCGATGTCGCGTATTTTAGGCCTTTAAAAGCTGCATGGAGATCCACCTTGGAACAATGGAAACTAAAACACCGTGGAGTCATTCCTAAAACGGAGTTTCCAAGGCTGCTGAGACAGAGTGTGGAAAAGGTTGGCATAAAGTCGAAAGAAAATTCCATTGCTGGTTTTAAGGCATGTGGAATTTTTCCGCTCGATCccaacaaagttttaaataaaattccacgAAATTTACACATCGATGAAAATGGTGAGAATAATGATCAGGCCTGGAATAAAGAATTTTCCCTAAgtgatttcgaaaatattgttataaactTTGACGAGTTTGATCCAAATCCGTCGACATCGAATGATGATACTTACATGATCGACACAGACTTATCCATGGAGCCAAGGATTGGGgagtttattattgcaaagtttccaACCGAGAAACGAGATCGATTGTTTGTTGGCAAAATCGAGAAttgttcaaagaaaaaagaatttactaTAAATGCCATGAGAAAAAAGGGAAACTCGGAAAAGGGGTATTTTGTTTATCCAGAAATACAGGACCTTTGCCTAATAAGCCAAGaccaaattattagaaaactgcGTCAAAAGTCTTTCAAGAGgggtaaatttgtttttaacttaGACAACGAcgaatttaaaaagttggagtaa
- Protein Sequence
- MPRIYKKKLGPQGKCNYDQEYVRRAVAAVRRGDMSMRQASERFGVPFSTIQRRYHGKHSLKYGRQPVLSGEQELRLKETIKICADWGFPLKSTDVRAIVQQYLNRLGVRDSRFKENMPGMDWFKSFMSRNKDLTVKLAENTKRVRGALTREVIQKYFENLQVTLKDVPAQNIINYDETNFVDDPGSAKVITKRGAKHAHRLIDSSKTSTTVMFAIAADGTLLPPYTVYKAKHSYDGWTEGGIEGARYNRSMSGWFDSDIFEDWFKTIVMLYFRKLAERKVLIGDNLNCHITTNVVQQCENNEIDFVLLPPNSTHLLQPLDVAYFRPLKAAWRSTLEQWKLKHRGVIPKTEFPRLLRQSVEKVGIKSKENSIAGFKACGIFPLDPNKVLNKIPRNLHIDENGENNDQAWNKEFSLSDFENIVINFDEFDPNPSTSNDDTYMIDTDLSMEPRIGEFIIAKFPTEKRDRLFVGKIENCSKKKEFTINAMRKKGNSEKGYFVYPEIQDLCLISQDQIIRKLRQKSFKRGKFVFNLDNDEFKKLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00115643;
- 90% Identity
- iTF_00115644;
- 80% Identity
- -