Agra054468.1
Basic Information
- Insect
- Anthonomus grandis
- Gene Symbol
- clz9
- Assembly
- GCA_030068095.1
- Location
- CM057948.1:24437093-24438442[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.8e-13 2.8e-11 45.2 0.2 7 44 24 61 19 62 0.94
Sequence Information
- Coding Sequence
- ATGCcgagaatttacaaaaaaaaattggggccgCAGGGAAAATGTAACTACGATCAAGAATATGTTCGTCGAGCAGTGGCAGCGGTTAGACGAGGTGATATGTCCATGAGACAAGCATCTGAAAGATTTGGTGTACCTTTCAGTACCATTCAAAGAAGATATCATGgcaaacattctttaaaatatggtCGACAGCCTGTACTAAGTGGTGAGCAAGAGCTAAGACTAAAGGAGACAATCAAAATTTGCGCCGACTGGGGATTCCCATTAAAAAGTACAGATGTTAGAGCAATTGTGCAACAATATCTAAATAGACTAGGAGTAAGGGATtccagatttaaagaaaatatgccaGGGATGGACTGGTTCAAAAGTTTTATGAGCAGAAATAAAGACCTTACCGTTAAGTTGGCTGAAAATACAAAACGCGTTAGAGGTGCATTAACCCGCGaggttattcaaaaatattttgaaaacttgcaGGTCACGTTGAAAGACGTCCCTGctcaaaatattatcaattacgACGAGACCAATTTTGTGGATGATCCCGGGTCGGCTAAAGTAATTACAAAAAGAGGTGCAAAGCATGCCCATAGGTTAATAGACTCCTCAAAGACCAGCACAACTGTGATGTTTGCAATAGCCGCTGATGGAACATTACTGCCTCCATATACGGTATACAAGGCAAAACATTCCTATGATGGTTGGACAGAGGGAGGAATTGAAGGAGCAAGATATAACAGAAGCATGAGTGGATGGTTTGACTCTGATATATTTGAGGACTGGTTTAAGACAATTGTCATGCCTTATTTTCGAAAGCTTGCTGAGCGTAAAGTTTTAATAGGCGATAACTTAAATTGCCACATTACCACTAATGTCGTACAGCAATGTGAGaataatgaaattgattttgtcTTACTCCCTCCCAATTCAACTCATTTGCTTCAACCGCTCGATGTCGCGTATTTTAGGCCTTTAAAAGCTGCATGGAGATCCACCTTGGAACAATGGAAACTAAAACACCGTGGAGTCATTCCTAAAACGGAGTTTCCAAGGCTGCTGAGACAGAGTGTGGAAAAGGTTGGCATAAAGTCGAAAGAAAATTCCATTGCTGGTTTTAAGGCATGTGGAATTTTTCCGCTCGATCccaacaaagttttaaataaaattccacgAAATTTACACATCGATGAAAATGGTGAGAATAATGATCAGGCCTGGAGTAACACAATAATCAgtcacctaaaaaatttaaaaactaccccGAATCAATCAACAAagagaggaaaaaaattattatcgagGCTGGCAAAAGTGTGTCAAGTCAAAGTTTATTATCAACGATAA
- Protein Sequence
- MPRIYKKKLGPQGKCNYDQEYVRRAVAAVRRGDMSMRQASERFGVPFSTIQRRYHGKHSLKYGRQPVLSGEQELRLKETIKICADWGFPLKSTDVRAIVQQYLNRLGVRDSRFKENMPGMDWFKSFMSRNKDLTVKLAENTKRVRGALTREVIQKYFENLQVTLKDVPAQNIINYDETNFVDDPGSAKVITKRGAKHAHRLIDSSKTSTTVMFAIAADGTLLPPYTVYKAKHSYDGWTEGGIEGARYNRSMSGWFDSDIFEDWFKTIVMPYFRKLAERKVLIGDNLNCHITTNVVQQCENNEIDFVLLPPNSTHLLQPLDVAYFRPLKAAWRSTLEQWKLKHRGVIPKTEFPRLLRQSVEKVGIKSKENSIAGFKACGIFPLDPNKVLNKIPRNLHIDENGENNDQAWSNTIISHLKNLKTTPNQSTKRGKKLLSRLAKVCQVKVYYQR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00115638; iTF_00115634; iTF_00115635; iTF_00115636; iTF_00115640; iTF_00115642; iTF_00116228; iTF_00115637; iTF_00115639; iTF_00115644; iTF_00115646; iTF_00115647;
- 90% Identity
- iTF_00115638;
- 80% Identity
- -