Acar001660.1
Basic Information
- Insect
- Anthocharis cardamines
- Gene Symbol
- -
- Assembly
- GCA_905404175.1
- Location
- FR989950.1:12101682-12105695[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.019 2.2e+02 2.4 0.3 11 51 42 82 32 85 0.80 2 12 0.0002 2.3 8.8 0.0 27 53 86 112 79 113 0.91 3 12 0.19 2.3e+03 -0.8 0.0 26 45 114 133 109 140 0.85 4 12 0.12 1.4e+03 -0.1 0.0 26 46 140 160 135 166 0.87 5 12 0.53 6.1e+03 -2.2 0.0 22 44 164 186 159 190 0.77 6 12 0.00099 12 6.5 1.2 21 48 191 218 188 225 0.89 7 12 0.00097 11 6.6 0.1 21 45 248 272 242 280 0.82 8 12 0.11 1.2e+03 0.0 0.0 21 46 304 329 298 335 0.76 9 12 0.0012 14 6.2 0.1 22 48 333 359 321 364 0.86 10 12 0.02 2.3e+02 2.4 0.1 23 47 362 383 356 388 0.69 11 12 0.0044 51 4.5 0.0 21 52 385 416 381 418 0.89 12 12 0.0012 14 6.3 0.1 23 43 415 435 409 439 0.91
Sequence Information
- Coding Sequence
- ATGAACGGTGATGACAAGTTATTATTAGAAGACATACTATCTGATGACTTCGATGACCAGCCATTATCCAATCTACGGAGTCAGGATTCCAAGCCTGATGCGGACTGGGTGACTCCGCCTTCAGTAAAAGATGAAACAAAAGCGCGGCAACAAAAATCGAAAAAATACTCGTGCGAGATATGCCAGAAGAAGTTCACATACCACGGTTCGCTAGAGATGCACGTTCAAACACACAAATTCACGAAAACCTACCCCTGTCTCCTGTGTCGAGGGGTTTTTAAGCAGAACAAAGAGCTCATATGCCATATTGAGGACTCTCACTTCAGTACAGAGGGTTTCTGTTGCTCAATTTGCGGCCAGACCTTGGAAACCGCTAAACTATTGAAGAAGCACTTCACAGTGCACTCCGACACGTTTAAATGCGATTTTTGCAAAAAGGAGTTTAGGAAAAAGAAAGGGCTGAAGGAACATTTGAAGGTGCACACGAAGGAGAAGAGATTCTCCTGCGATATCTGCCAGAAGAGCTTTGGACACAACCAGACTTTGAAGTCGCATATTTTGACGCATACAGGCGAAAGACCCTACGTGTGTGATATCTGCGGCCGCCGCTTCCCCCAACGCACCCACCTCAAACGACACATCCACATCATCCACGCGGGAATCAAACCTCACACCTGTCACTCATGCAACAAACAGTTCTCCAGCAAAAGCTACCTACTCATACATCAGCGGCAACACACCGGCGAAAAGCCGTACACTTGCGAGATATGCAACAAGTCGTTCCGCGCGCACACTACCCTCAAAGTCCACTCCCGAGTTCACACCGGTTTTAAACCGTACCGGTGTTCGTTTTGTGATCGTCGGTTTGCGCAAATGGCGAGCTTCAAGCTTCATGAACGTACTCACACCGGGGAGAGACCGTTCGCGTGTAAAGTGTGCAAGAAATCCTTTTCGGATAACGGCTATCTGAAGATTCACATGCGGATACACACGGGGGATAAACCGTTCGATTGTGCGGTTTGCAAGCGCTCGTTTAGAGAGACGGGGCAATTGAAACGACACATGCGCACGCACACGGGGGTAAAACCGTACACGTGTAAAGTTTGCAATAAACAGATCGGGAATCTGTCGAAGCATATGCGCGTGCACACAGATGAGAAACCGTTTAATTGTGATTTTTGCGAGAAGCGGTTTTCGGTTAGCGGTAATTTGAAGATACATCTGCGGGTACACACCGGTTCCAAACCGTTTTGTTGTGACGTGTGCAATAGTTACTTTACGCAAAGTAGCGGTTTGAAACGGCATAAGTGTGTACTGAAAGGGGATTGA
- Protein Sequence
- MNGDDKLLLEDILSDDFDDQPLSNLRSQDSKPDADWVTPPSVKDETKARQQKSKKYSCEICQKKFTYHGSLEMHVQTHKFTKTYPCLLCRGVFKQNKELICHIEDSHFSTEGFCCSICGQTLETAKLLKKHFTVHSDTFKCDFCKKEFRKKKGLKEHLKVHTKEKRFSCDICQKSFGHNQTLKSHILTHTGERPYVCDICGRRFPQRTHLKRHIHIIHAGIKPHTCHSCNKQFSSKSYLLIHQRQHTGEKPYTCEICNKSFRAHTTLKVHSRVHTGFKPYRCSFCDRRFAQMASFKLHERTHTGERPFACKVCKKSFSDNGYLKIHMRIHTGDKPFDCAVCKRSFRETGQLKRHMRTHTGVKPYTCKVCNKQIGNLSKHMRVHTDEKPFNCDFCEKRFSVSGNLKIHLRVHTGSKPFCCDVCNSYFTQSSGLKRHKCVLKGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00115126;
- 90% Identity
- iTF_00115126;
- 80% Identity
- iTF_00115126;