Acar019670.1
Basic Information
- Insect
- Anthocharis cardamines
- Gene Symbol
- -
- Assembly
- GCA_905404175.1
- Location
- FR989968.1:478369-479319[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.00026 3 8.4 0.3 21 48 131 158 126 162 0.91 2 5 0.0018 21 5.7 0.3 26 47 165 186 159 193 0.84 3 5 0.032 3.7e+02 1.7 0.1 21 45 188 212 184 216 0.90 4 5 0.00044 5.1 7.7 0.1 11 52 234 275 228 276 0.90 5 5 9e-07 0.01 16.3 1.3 23 46 274 297 269 303 0.86
Sequence Information
- Coding Sequence
- ATGAAAAGTGACGCAAATGAAACATTTTCTGATAATGAAGACGAGCCTCTCGCTAAAATCGCTGCTGCTCAAAATACGACCACATCTTATGAAAAATTTTATGACGCTCTAGTTACATTTCGCAACCATTTCGTGAAACAACACACAGATAATAGTCATCTTGATTTGACGGAGTCTAGTTCAGAGGAGGAGATAGAACAACCAGATATTAATGAATACGACGATTTAACACAAAACAACATGCGCCGCGACAGAATGGACGAACAGACGAGAATAGAACTGAGCGAAGTGCAGTCGAAGATTAACGGCAAAGTGTATTACACTTGTAAGATGTGCGGGAAAAGCCTCAGTTCCACTCACACCTACTTATTCCACAAAAACATTCACACGGGGGAGAGGCCGTGCGTGTGTCACGTGTGCGGGAAGACGTTCCGCGCCCCGAACGGCCTCCAGCGACACTTGAAGGAAACCCACGAGAGAGTCAAAAGTTACGTTTGCGTGCTCTGCGCTAAAACCTTTGTGAACTCGCAGAATTTGCGGCAACACATGCGGATACACACAGGGGAAAGACCTTACGTTTGTTCCCAGTGCGGGAAGCGGTTCACTCAGAGCGGCTCGCTTCACGTTCATTTGAAAACGCACACCGATCTGTTTCCATTTAATTGCACAGAATGTGGCGCCCAGTTTCGACTGCGCTCTGGTCTGTCGAAGCATAGATTGAAACATAGCGGTGAGAGACCCCACATATGTGTCAACTGTGGAAAGGGCTTTCGCCAGAAACACGAGCTGAACAGCCACATTCTGACACACAGCAACGCTAAACCCTTCACGTGCTTGATCTGCGGCGCTGCTTTCCGACAGCGGAGGGCCTTGAGGCACCACACGAAACGATTACATGAAACTAGGGAACACTCTAATAATGTCTACGCGCAGATTCCTTATAGAATATAA
- Protein Sequence
- MKSDANETFSDNEDEPLAKIAAAQNTTTSYEKFYDALVTFRNHFVKQHTDNSHLDLTESSSEEEIEQPDINEYDDLTQNNMRRDRMDEQTRIELSEVQSKINGKVYYTCKMCGKSLSSTHTYLFHKNIHTGERPCVCHVCGKTFRAPNGLQRHLKETHERVKSYVCVLCAKTFVNSQNLRQHMRIHTGERPYVCSQCGKRFTQSGSLHVHLKTHTDLFPFNCTECGAQFRLRSGLSKHRLKHSGERPHICVNCGKGFRQKHELNSHILTHSNAKPFTCLICGAAFRQRRALRHHTKRLHETREHSNNVYAQIPYRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01205980;
- 90% Identity
- iTF_00115177;
- 80% Identity
- iTF_00115177;