Acar008870.1
Basic Information
- Insect
- Anthocharis cardamines
- Gene Symbol
- sip1
- Assembly
- GCA_905404175.1
- Location
- FR989969.1:2272929-2284746[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-50 4.9e-46 157.9 0.1 6 231 370 577 365 590 0.95 2 2 9.7e-05 1.1 9.1 0.0 243 275 613 645 601 645 0.93
Sequence Information
- Coding Sequence
- ATGTCGGACGATGAAGTGATACGCTTTGAAATTACGGATTATGATCTCGAGAATGAGTTTAATCCTAACAGAAGTAGGAAGGCAAAAAGAGAACATCAAATATACGGTGTCTGGGCACAAGATAGTGATGAAGAAGATAATGAGGATAACATAAGACAGAGAACTCGTAAACCAAAAGACTTCTCAGCTCCTATAGGTTTTGTTGCTGGTGGGGTGCAACAGGCAGGAAAGAAAAAAGAAGAAAAGAAAGAATTACAAACTAAAGAGGCATCAACTTCAAGGCCACAGTATGCCAACAGTTCTGATGAAGAAGACATAAATAACCCAGATGAGAATGAAACAGCAGGAATAAGGCGTGCAGGGCAGGGGATGAGGCCTGCTAACCTTGGGGGAAATGTTGGTTCTTGGGAGAAACATACTAAAGGAATTGGGGCTAAACTACTGTTACAGATGGGTTACCAGCCTGGTAAAGGGTTGGGTAAAAGCCTTCAAGGTATATCTGCACCTGTTGAAGCTACCTTGAGAAAGGGTAGAGGTGCCATTGGTGCTTATGGACCTGAGAAAGCTGCTCTAAAAGCCAAGAAGGAAGAGGAAAAGCGACTAAAGGAGAAAGCGGAACAGGAGAAAGGAACGTCTCCGAAGACCTACAACTGGAAGAAATCTCACAAAGGACGCTACTTCTACAAGGATGCCGCTGACGTCATACAAGAGGGTAAACCCACTATGCATACTATTAGCAGCAATGAACTATCTCGCGTGCCAGTCATAGACTTAACGGGTCGTGAGAAGCGAGTACTGAGCGGCTACCACGCGCTGCGGGCCGCCGCGCCGAGATACGAGCACGAGCCGAGGCGGGAATGCACTAACTTCACTCTACCCGCACTAGCTCATAACCTGCAGCTCATGGTCGAGTGCTGCGAACAGGATATAATCCAAAACGCTCGGGAACTGCAACACGCGGAGGACGAGATAGTTGTTCTCGAGCGAGATTTAGACGAGTATAACACGAAGCTGCGCGATCAGGACACGGTCATCACCAAGGTGCAGTCCATCCTGATGAAGGTGGAGACCTTGAACCGGCCGGATGTGTCTCTTGAGACCTCCTATGAAGTTTTGGCTGATTTGAAGGAGTCGACGCCACTAGAGTACGAAATGTTCGGTCTGGGCACGATCGGGGCCAACATGGTGAGCCCGCTGTTCAGCGCGCTGCTCGCCAAGTGGGAGCCGCTGCAGGCCCCCGGGGGGCCCGCGGGGACCTTCCTCAAGTGGCGGCCGCTGCTCACCGAAGAGGCCTATAATGCGCTGCTGTGGCAGCACTTTGTGCCCAGCATCACTGCTGCTGCTGAGGGTTGGAACCCGCGTACGTCTGACCCGATGCTGCGTATCTTCGAGTCGTGGGTGGAGGCGTGCCCGGGCTGGCTGCTGGCGGACTGCGCGGCCAAGTGCGTGGCGCCGCGGCTGCTGGCCGCCGTGCGCGCCTGGGACCCCACCAGCGACACGCAGCCCTTGCACGAGTGGGTGCTGCCCTGGCATCCGCTAGCTGGTGAAGCGCTGAACGGCAGCGTGTACCCGCTGATCCGGTCGCGGCTGGCGGGCGCGCTGTCCGCGTGGCACCCGGCGGACGCGTCCGCGCGGCCGCTGCTGGCGGCGTGGCGCGCGGCGTGGGGCGGCGCGCTCACCGCGCTGCTGCACCACCACGTCGTGCCCAAGCTGGAGCACTGCCTGCAGCACGCGCCGCTCGAGCTGGAGTGTAAAGGGACGAGAAGCGTATACGCGGGGGTCAAAAAAACATCTGAACCAATGCGCGAGATTGGCGGTTACTATGGTTATGCAGCCGCGTGGCTGTGGTGCGTGGAGTGGGCGGAGCTGCTGGGCGCGGCCACGCTGGCGGCGCTGGCGGGCCGCGCGCTGCTGCCGCGCTGGCTGGCCGCGCTGGCCGCGTGGCTCAACACGGCGCCGCCGCACGCCACCGTGCTCGCCTCCTACACGCACTTCAAGAAAATGTTCCCTCCTGATGTCCTGAAGGAACCCGTGGTAAGGGACGCGTTCAGAAAGGCGTTAGACATGATGAACAGAAGCACAGACATAGATGCTGTGGAACCACCCCCGCCCCCTCGCTTCACCATCACAGACACCAAAGAATCGACCTCCAGGATCGCCGATGTGTTATCGAGCTCAACACAAAAAAGCTTCTCGGAACTTCTGGAAAGTCGGTGTATGGAGAAGGGGATCACCTTTGTACCTATGTCTGGGAAGACGAGGGAAGGGAGGCCGATTTACAAGATTGGGGAGCTACAGTGCTATGTCATACGGAATATCGTGATGTACTCAAACGACAGTGGCAGGAATTTCTTACCAATTAGTATGGAGAAGTTGTTGAAAATGGTGGAAGAATAA
- Protein Sequence
- MSDDEVIRFEITDYDLENEFNPNRSRKAKREHQIYGVWAQDSDEEDNEDNIRQRTRKPKDFSAPIGFVAGGVQQAGKKKEEKKELQTKEASTSRPQYANSSDEEDINNPDENETAGIRRAGQGMRPANLGGNVGSWEKHTKGIGAKLLLQMGYQPGKGLGKSLQGISAPVEATLRKGRGAIGAYGPEKAALKAKKEEEKRLKEKAEQEKGTSPKTYNWKKSHKGRYFYKDAADVIQEGKPTMHTISSNELSRVPVIDLTGREKRVLSGYHALRAAAPRYEHEPRRECTNFTLPALAHNLQLMVECCEQDIIQNARELQHAEDEIVVLERDLDEYNTKLRDQDTVITKVQSILMKVETLNRPDVSLETSYEVLADLKESTPLEYEMFGLGTIGANMVSPLFSALLAKWEPLQAPGGPAGTFLKWRPLLTEEAYNALLWQHFVPSITAAAEGWNPRTSDPMLRIFESWVEACPGWLLADCAAKCVAPRLLAAVRAWDPTSDTQPLHEWVLPWHPLAGEALNGSVYPLIRSRLAGALSAWHPADASARPLLAAWRAAWGGALTALLHHHVVPKLEHCLQHAPLELECKGTRSVYAGVKKTSEPMREIGGYYGYAAAWLWCVEWAELLGAATLAALAGRALLPRWLAALAAWLNTAPPHATVLASYTHFKKMFPPDVLKEPVVRDAFRKALDMMNRSTDIDAVEPPPPPRFTITDTKESTSRIADVLSSSTQKSFSELLESRCMEKGITFVPMSGKTREGRPIYKIGELQCYVIRNIVMYSNDSGRNFLPISMEKLLKMVEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00430688;
- 90% Identity
- -
- 80% Identity
- -