Ayam008446.1
Basic Information
- Insect
- Antheraea yamamai
- Gene Symbol
- -
- Assembly
- None
- Location
- AY:1326622-1342838[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00056 2.8 7.9 0.0 25 49 293 317 287 321 0.86 2 4 0.045 2.2e+02 1.8 0.2 16 43 368 395 357 399 0.80 3 4 0.00025 1.2 9.0 0.1 25 45 402 422 397 426 0.90 4 4 0.0048 23 4.9 0.0 18 45 479 506 472 510 0.85
Sequence Information
- Coding Sequence
- ATGGAGTTATGCAGGGCCTGTTTGTCTTCAGAGAAAGAAATAGTTCCATTAGACGAAAAATTTATTGTGAATTACAATTTATTAACTAACTTACACGTTCAAATGAGCGATGGATTGCCACAGTTTATTTGTTGCAGTTGTTTTGATACAGTGCAACTCTTTATTATATTCAGAGAAAAATCTCATACGTCCGAAACGACGTTGCGAGAAGTGTTAGTTTCACATATAAAATGTGAAGAGACCTTTACAGATGATATGTGCTATGATCATGATAATTTAGTAAGTGATAGCATAAAACCTGAAATTGTATTTGAATATAAAATTGATGAACCCATTTTGAATGGCTATGATGAAGCTTTTAATGTAATGGATAAAATTGACAAGAATTTACTAACTAAATCAGAAGATATTAAACCAAAGAGGAAAAGAGGGAGGCCGAAAGGTATATTTAAGAAAAGTAAAAAAAATACATCCAGATGTAAGAATTTAAGTCTAAGTAATACAAGAATTATGGAAGGAAGAATTTTACAAGAATTAAAACAAAAAAAAAGCCAAGAAATGACCTTTAGGTGTAATAAATTAAGTTTAGATACAACTAAGGAAGAGATACTCACAGAAAAATTGTTTTGTGGCCTATGCAGTAAAAGTTGTGATGAAAAGATTGATTTAATTATGCACTTAGAAAGCCATAAAGAAAGTAGATGTTGCAAACAATGTCCTGAACACTTTGACAGTTGGTCACAACAACTTGGCCACAGGCTGAAGCATATACCAAAAAAACAGATGTGCTGTCACTTATGTTCAAAACGATATGTTTCATGTGATTATTTGGAGTTTCATTATAGGAATGTACATTTTGAAGAGGAAGGTAAAACACTTACATGCAAAATATGTTTCTCATCGTATACTACTCCAAAAAATCTTAAAAAACATATATGGGCAACACATGCAGAAAAGAGATTCACTTGTGACTATTGCTCAAAATCATACCATAGTAAATCTCGCTTAAAAGTCCACATTGTAATGCATACCGGTAATAGGGCGTACTCTTGCGATATATGCGGTTTCAAGTCGAAATTTTATAGTGGTTTGAAGGATCACCAAATAAGAAAACACACTGACGACAAAGTGAACTGTCGAATTTGCCACCGTGTATTTTCCAATCAGCAACAATTCGACAGACACAAATGTGGTAAAAATGAAACCGTTTGTCCTATCTGCGGACTACAGTTTAAAAAAAATAATAATCTCGCCCGCCATTTAAAAACGCATAGTGACGTGCAAAAGTACGAATGCACACGTTGCCCTGCTAAATTCAAAACGAGAGGTGCACTAAGCGTACACCTCGACAGACATGACGGTATACGAAGGAGACAGTGTGAATACTGTTCAGACAAGTTTTACGCTGCCTCAACTCTTATTAAACATCGACGAATACATACAGGTGAAAAGCCATATGTATGCAAAATTTGCAATAAGGGGTTCACAGGAAATCATAATTTAAAAATGCACATGAAAGTACACGGAGAACACAATTTAATCAAGAAAAAAACTAAAGATCCAAACAGTAACGAGGTTAATTCCCTGGAATTAAAGTAA
- Protein Sequence
- MELCRACLSSEKEIVPLDEKFIVNYNLLTNLHVQMSDGLPQFICCSCFDTVQLFIIFREKSHTSETTLREVLVSHIKCEETFTDDMCYDHDNLVSDSIKPEIVFEYKIDEPILNGYDEAFNVMDKIDKNLLTKSEDIKPKRKRGRPKGIFKKSKKNTSRCKNLSLSNTRIMEGRILQELKQKKSQEMTFRCNKLSLDTTKEEILTEKLFCGLCSKSCDEKIDLIMHLESHKESRCCKQCPEHFDSWSQQLGHRLKHIPKKQMCCHLCSKRYVSCDYLEFHYRNVHFEEEGKTLTCKICFSSYTTPKNLKKHIWATHAEKRFTCDYCSKSYHSKSRLKVHIVMHTGNRAYSCDICGFKSKFYSGLKDHQIRKHTDDKVNCRICHRVFSNQQQFDRHKCGKNETVCPICGLQFKKNNNLARHLKTHSDVQKYECTRCPAKFKTRGALSVHLDRHDGIRRRQCEYCSDKFYAASTLIKHRRIHTGEKPYVCKICNKGFTGNHNLKMHMKVHGEHNLIKKKTKDPNSNEVNSLELK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00114373;
- 90% Identity
- iTF_00114373;
- 80% Identity
- iTF_00114373;