Aper001958.1
Basic Information
- Insect
- Antheraea pernyi
- Gene Symbol
- MBD-R2_1
- Assembly
- None
- Location
- GWHABGR00000034:4511934-4533933[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7 1.2e+04 -3.8 0.1 41 61 101 120 101 131 0.79 2 2 1.2e-16 8.5e-13 47.9 0.0 5 70 678 742 674 745 0.93
Sequence Information
- Coding Sequence
- ATGGAAAATATGGCTGATTTTGGAACAATAACATCCCAAGAAAGTACAGAAAAGATGTCAGAGAGTCATGAAAATGAAGCAAATATGTCAGGTAGTAGTAAAGAATCTGATGAAAATGTTGATGCAATAAAGAAATTCATTGAGGATCAAACAAAAGAGATTGAAGATCAGAAGTTGGCTGCAAATAAAGTGTTAGCTGCAGTTTATGAAATCAACGATGGTGATATAAAGAATACAAATAATCAAAAAGACGAAAGCATAATGGCATCAAATGTTATGGACATGATCCTTAGTGATTCGGAGAAGCTAACACAGAAAAAGGATATCAAAGAAATACCTCAACAGAACTTAAATATGGACGAAAAATTGAGCAGCAGTATGTCATTATCTGTAGGTTCGAGAGTAGAAGCTAAAGATTTTAGTGAGGTGTGGCATATAGCCGAGATTGTGGAGGTTGATTATGATGACATGGAAGTGTTGGTTCAGTATGATCAAAATACCAAAAAACATAACGAATGGATCAATGTAAGTAGTCCACGACTTCGTCCCATAGGATCTATTCCGGCCAAACCGGTGTCAATACAACGAGATATTATACCAGAGCCTGTACCAATTAAGACAGATGATAACGAAAGAAAAGTTGAGAAAGCAGATGACAAGACTGTCATGTCATTTGATGTAGGAGAGAGATGTCTTGCACGTTGGAGAGATAATAGGAGGTTCATCGCTACGGTACATAATGACCTAGGGAATGGTACGTATGAAATCATATTCGACGACGGTTTCCATTGGAAGTGTAGCAAATCAAGGCTCTACAAATGGAAGCCAATAAAATGTGGTACTCTTACTGTAGACACATCATTGAATTCGCCTACTTCTTCGACACACTCACCTATACAAAGCGGTGGACCTAGTAATTCTATAACACATAGTCCTCAACCGGTATTTCACACACACCTATTCGACCCCGCTCGAGATTACTTAGGCTCTAAGAGCGAGCGTCGTGAGATGAAACGTAAATTGAATATAAAAGAAATATTCAATATTGGACAAAAGCGTTCGAAGTTAAGAAAGATAGACAGGGATAAGCCTAAACCTATTGTGGAAAAGAAACCAAGAGTTGGTAAGAAATCGTCAAAAGCCAAAGTAGAAACAGTTGTAAAGCAGGAAATTGATGTTGATATTGTAAAGCAGGAAATTGATGTTGATATGAAACGAAAAATTCCTGATGCAGTAGCTTCTATCATTGGCACCATTCAAAAAGATGTATTTCAAACTTCAGAAGTAAAATTAGAAAATATAACTGAGACCGAGGAGAAATCCAAAGAAGATACTGCAAGTGATGATAATGTTGAAGAAAAAGAACCATGTATAACCTTAAACGATACGACGGATCCTGATGAAAGTGCTTTATCAGAGGGAGTGAAATCTGACTCAGATCCTGTCCTGGAAGAGGAAGACAAGCTTGAAAATTTTGAAAAACAAGACGAGATCAAACATGAAGAAGTCATTGATAAAATGAAGGAAGTTATCAATAAATTAGAAGACGGTTTAAAAAACGATATTGTATGTTCTCCTAAGCCAGAGATTAAGGAAGAAACTACTGTCATCAAAGAAGAATTCAATGTAGAAATCAAAGAAGAGATTAAAGAAATTGACGACGTTAAAGACAAACCAGAAGAAAGTGACACAAAAGTAAACACAGATAGTGAGAAAATTAATAAATTGTCAAAAATAAAGAAGGGCAAGAAACTGAGATTGTTGAGGGAGAAGAAGGTAAAGAAACAAGTGGAAAAGGTGAAAAACGAGTTGGAGGAAATGAAAAAACAAGTCGACGAGATGAGGAAACAAATGTTGATGAAGACTCAAGAGTTGACGAAAGTCCATACAGAGATGCCAGAGAGTTTTCTACTGCCCGGAGAGTGGTGCTGTAGGTGGGTGAATGGACAACCCGTGGGTACAGTTAGCGAGATTGTATGTGAAGTTAAATTACATTCTGATGGTAGACCTGCTTTACCCAGGAGAAGTGTTCAGGTTGAAGACAAGAGACTACCCCCAGGTTGGACCAAGCATATGGTTAGGAGAAGTTTAGGACATTCGGCGGGCAAATGGGACGTAGTACTTGTAAGTCCTGAAAATCGTCGGTTCCATACGAAAACTGATATGCGTATCTATCTGGAGAACAATCCTGATAAGTCCCTGCAACTTTATGAATACGCGTTGACTGATTTCGGGGTTCATTTGAAACTGGCCCGGCGTATGGGTTGGATATCTAACACTCCCGGGGGAGTCGCCGATGGTCCCACTCAACCTATAAACGCTCTAAGCATCACATCACCTTTAATTAAGAAGAAGAAGCAGCTATCTCTAAATAAACAGCGGAAGTTGGAGAGAAAAAAGAAGTTTATGCTTCACTTGAAAAAGGCTGAACCTTTACAAGCGTATATGATAAATACCGAAGAAGAAGAAGTGAGAGCTAGTACTTCGAAAGACACTGAATTAACGACTGAGATCCCACTTGATGTTCCTCCGTTAGAAGACGGTTATGTTTACGTTGGATCTTTAAAAGTCCAAATTATAGACAATTTGCTACGATGTCCGGCGGATGGCTGCTTCAAGAACTTTCGAAACAACACCCTTTTGCAAATGCACATTAAACATTATCATCGGGAGCTGAGGGAAATGTTGGGTTCCACACCGAAGGTTCTAGATTTAGCGTACGCTCGAACGATGCCGACGGATGCTGAGATACCGAGAAATGTCGATTCGAAAGTGCTCAAGGTTAAAATTAATCGACTACCGAAACGGGAAGACCAGAAGTCTGAAAGCAGGATTAATCCTGATGTACTCGATGTCGAACCGACAACTCCAATATGTAATGAACCAGACAGTATAATACCAAAGACACAAGACTCTCCAAAGCTGCGGGACGCTTTAGTTAACAAACCGGTAAAAAGGCCAAAAGTGCTACTACCCGTGAGGAGACCCGAACCGGAGCAGTGTCTACCGGAAGATATCGAATCGCTTGATAATATTGATGATGACGAATCGCCAATCGACGTACCGACAGTCGAACAGTTGGATTTCGAAACGGCAATATGCACACACACGGTGACGAAACCGAATGGTGAGAAGAAGAGGAGTTTGAAGAAGTTGAAGTCTTTCGCTGTGGTGTCGCAACGTCAAAGCGAGGAAGAGGAATGGTTCGCGGGCAATTCGGACTACGAGTCGCGGTCGAGTTACCCGCGCTCGGGGACACCCGATTCGAAGGTTCTAGAAAGACAACTGACGCAGTATATACCGGAGATGAATGCACGGCCGAAGCAGCGAGATAACGCATCGTATATGTACACGGAGACCGGTGAGAGGATCAAGCTGGTCCGCATGAAGCGCGAGGAGATAATCAACTGTCACTGCGGGTTCCGCGAGGAGGATGGTCTTATGGTGCAGTGCGAACTCTGTCTCTGCTGGCAGCACGCCCTCTGTCATAACATACATAACGAATCTCAGGTTCCAGAGAAGTACACGTGCAGTATATGCGTGAACCCGCGTCGAGGGCGCCGCTCGATGCGGTTCCTGCACGACCAGGACCGGCTGTACGAGGGCCTGCTGCCGGGCGCCAAGCCCTGCGACTCGCTGCGGCGCTCGCACGAGCTCTCCGGCAACCTGCTGCTGCTGCGGGACGCGCTGCACGCGCTCCGGGTCAAGAGCTATGTCGCCATGAAGAAAAATCATCCCAAATTGTATTTGTGGGCTCAGGATTGGGAGCAGGCAGAGATCACGAGCACGCAGGAGAAACTCAACTCTGGTTACTCCGACTTGACCATCGTGCCCAATAACGCCAATAAGGAGTTTCCACCAGTATCGAATCAACACGTACTGAGGGATCTGCCGCTACATATAAATACAACGTCATCCGAGGAACAGGATTTTGCGAGGTATGCGGAGAGAGAAGACTCTCAAGGGATGCTGAGCGATTTGATCTCGAATCCTTGCGACGCGACCCTGGAGCTGCCCATCAGCACATCTGAATTGGAGCAACTCGCTAACACGGTTCAAGCGGTTGAAGAGAGCGCTCTTACAAGCATATCAGCCCCGGAGCCGGAGCCGCCCATAGAGAACAGCGTGTGCTGTGAGCAATTACTAAGTCACATCCAGCACTGTCAAGCCCTCATAGACGCCAGGCTCGACTCCATAGAGGCGCAGGTCGCTGAGTTGGAATCTCAAGATCCTACAGTGGAAGGCGACGACACGGCCGATAACTTCCCGCGGACGAAGCAAACTATCAAAATGCTGATGCGAGACCTCGACGCCTTAGAAGAGCTCGGCATTATCACATAA
- Protein Sequence
- MENMADFGTITSQESTEKMSESHENEANMSGSSKESDENVDAIKKFIEDQTKEIEDQKLAANKVLAAVYEINDGDIKNTNNQKDESIMASNVMDMILSDSEKLTQKKDIKEIPQQNLNMDEKLSSSMSLSVGSRVEAKDFSEVWHIAEIVEVDYDDMEVLVQYDQNTKKHNEWINVSSPRLRPIGSIPAKPVSIQRDIIPEPVPIKTDDNERKVEKADDKTVMSFDVGERCLARWRDNRRFIATVHNDLGNGTYEIIFDDGFHWKCSKSRLYKWKPIKCGTLTVDTSLNSPTSSTHSPIQSGGPSNSITHSPQPVFHTHLFDPARDYLGSKSERREMKRKLNIKEIFNIGQKRSKLRKIDRDKPKPIVEKKPRVGKKSSKAKVETVVKQEIDVDIVKQEIDVDMKRKIPDAVASIIGTIQKDVFQTSEVKLENITETEEKSKEDTASDDNVEEKEPCITLNDTTDPDESALSEGVKSDSDPVLEEEDKLENFEKQDEIKHEEVIDKMKEVINKLEDGLKNDIVCSPKPEIKEETTVIKEEFNVEIKEEIKEIDDVKDKPEESDTKVNTDSEKINKLSKIKKGKKLRLLREKKVKKQVEKVKNELEEMKKQVDEMRKQMLMKTQELTKVHTEMPESFLLPGEWCCRWVNGQPVGTVSEIVCEVKLHSDGRPALPRRSVQVEDKRLPPGWTKHMVRRSLGHSAGKWDVVLVSPENRRFHTKTDMRIYLENNPDKSLQLYEYALTDFGVHLKLARRMGWISNTPGGVADGPTQPINALSITSPLIKKKKQLSLNKQRKLERKKKFMLHLKKAEPLQAYMINTEEEEVRASTSKDTELTTEIPLDVPPLEDGYVYVGSLKVQIIDNLLRCPADGCFKNFRNNTLLQMHIKHYHRELREMLGSTPKVLDLAYARTMPTDAEIPRNVDSKVLKVKINRLPKREDQKSESRINPDVLDVEPTTPICNEPDSIIPKTQDSPKLRDALVNKPVKRPKVLLPVRRPEPEQCLPEDIESLDNIDDDESPIDVPTVEQLDFETAICTHTVTKPNGEKKRSLKKLKSFAVVSQRQSEEEEWFAGNSDYESRSSYPRSGTPDSKVLERQLTQYIPEMNARPKQRDNASYMYTETGERIKLVRMKREEIINCHCGFREEDGLMVQCELCLCWQHALCHNIHNESQVPEKYTCSICVNPRRGRRSMRFLHDQDRLYEGLLPGAKPCDSLRRSHELSGNLLLLRDALHALRVKSYVAMKKNHPKLYLWAQDWEQAEITSTQEKLNSGYSDLTIVPNNANKEFPPVSNQHVLRDLPLHINTTSSEEQDFARYAEREDSQGMLSDLISNPCDATLELPISTSELEQLANTVQAVEESALTSISAPEPEPPIENSVCCEQLLSHIQHCQALIDARLDSIEAQVAELESQDPTVEGDDTADNFPRTKQTIKMLMRDLDALEELGIIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00112518;
- 90% Identity
- iTF_00114122; iTF_00114158;
- 80% Identity
- -