Amun036900.2
Basic Information
- Insect
- Anorthoa munda
- Gene Symbol
- -
- Assembly
- GCA_945859655.1
- Location
- CAMAOM010001231.1:234663-240010[-]
Transcription Factor Domain
- TF Family
- CSD
- Domain
- CSD domain
- PFAM
- PF00313
- TF Group
- Beta-Scaffold Factors
- Description
- In molecular biology, the cold-shock domain (CSD) is a protein domain of about 70 amino acids which has been found in prokaryotic and eukaryotic DNA-binding proteins. When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees Celsius, a 4–5 hour lag phase occurs, after which growth is resumed at a reduced rate.During the lag phase, the expression of around 13 proteins, which contain cold shock domains is increased 2–10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.084 8.5e+02 1.3 0.0 14 38 20 44 12 51 0.80 2 13 0.0082 83 4.5 0.0 13 39 93 119 84 126 0.81 3 13 0.0087 88 4.4 0.0 14 39 184 209 176 216 0.81 4 13 0.15 1.5e+03 0.5 0.0 15 39 275 299 266 305 0.79 5 13 0.0087 88 4.4 0.0 14 39 364 389 356 396 0.81 6 13 0.0078 79 4.6 0.0 13 39 453 479 446 486 0.81 7 13 0.013 1.3e+02 3.9 0.0 17 39 547 569 536 576 0.80 8 13 0.0087 88 4.4 0.0 14 39 634 659 626 666 0.81 9 13 0.0078 79 4.6 0.0 13 39 723 749 716 756 0.81 10 13 0.0087 88 4.4 0.0 14 39 814 839 806 846 0.81 11 13 0.0087 88 4.4 0.0 14 39 904 929 896 936 0.81 12 13 0.0087 88 4.4 0.0 14 39 994 1019 986 1026 0.81 13 13 0.051 5.1e+02 2.0 0.0 14 44 1084 1115 1076 1116 0.74
Sequence Information
- Coding Sequence
- ATGGCCGAGGAAGCTGCTGAGCGAGAAGTCGTGCACGGCACCTTCCAGCCAGCCGTCCGCGTCGTGCAGCAGCCGCGACGGCGACAGCGACATGGTCACAAGGTACTCACTATGGTCACAAGCCAGCCGTCCGCGTCGTGCAGCAGCCGCGACGGCGACAGCGACATGGTCACAAGGTACTCACTATGGTCACAAGGTACTCACAGCAGGTCTACCCTCCAGATGGCCGAGGAAGCTGCTGAGCGAGTAGTCGTGCACGGCACCTTCCAGCCAGCCGTCCGCGTCGTGCAGCAGCCGCGACGGCGACAGCGACATGGTCACAAGGTACTCACTATGGTCACAAGATGGCCGAGGAAGCTGCTGAGCGAGAAGTCGTGCACGGCACCTTCCAGCCAGCCGTCCGCGTCGTGCAGCAGCCGCGACGGCGACAGCGTCATGGTCACAAGGTACTCACTATGGTCACAAGGTACTCACAGCAGGTCTACCCTCCAGATGGCCGAGGAAGCTGCTGAGCGAGAAGTCGTGCACGGCACCTTCCAGCCAGCCGTCCGCGTCGTGCAGCAGCCGCGACGGCGACAGCGTCATGGTCACAAGGTACTCACTATGGTCACAAGATGGCCGAGGAAGCTGCTGAGCGAGAAGTCGTGCACGGCACCTTCCAGCCAGCCGTCCGCGTCGTGCAGCAGCCGCGACGGCGACAGCGTCATGGTCACAAGGTACTCATTATGGTCACAAGGTACTCACAGCAGGTCTACCCTCCAGATGGCCGAGGAAGCTGCTGAGCGAGAAGTCGTGCACGGCACCTTCCAGCCAGCCGTCCGCGTCGTGCAGCAGCCGCGACGGCGACAGCGACATAGTCACAAGGTACTCACTATGGTCACAAGATGGCCGAGGAAGCTGCTGAGCGAGAAGTCGTGCACGGCACCTTCCAGCCAGCCGTCCGCGTCGTGCATCAGCCGCGACGGCGACAGCGACATGGTCACAAGGTACTCACTATGGTCACAAGGTACTCACAGCAGGTCTACCCTCCAGATGGCCGAGGAAGCTGCTGAGCGAGAAGTCGTGCACGGCACCTTCCAGCCAGCCGTCCGCGTCGTGCAGCAGCCGCGACGGCGACAGCGACATGGTCACAAGGTACTCACTATGGTCACAAGATGGCCGAGGAAGCTGCTGAGCGAGAAGTCGTGCACGGCACCTTCCAGCCAGCCGTCCGCGTCGTGCAGCAGCCGCGACGGCGACAGCGACATGGTCACAAGGTACTCACTATGGTCACAAGGTACTCACAGCAGGTCTACCCTCCAGATGGCCGAGGAAGCTGCTGAGCGAGAAGTCGTGCACGGCACCTTCCAGCCAGCCGTCCACGTCGTGCAGCAGCCGCGACGGCGACAGCGACATGGTCACAAGGTACTCACTATGGTCACAAGATGGCCGAGGAAGCTGCTGAGCGAGAAGTCGTGCACGGCACCTTCCAGCCAGCCGTCCGCGTCGTGCAGCAGCCGCGACGGCGACAGCGTCATGGTCACAAGGTACTCACTATGGTCACAAGGTACTCACAGCAGGTCTACCCTCCAGATGGCCGAGGAAGCTGCTGAGCGAGAAGTCGTGCACGGCACCTTCCAGCCAGCCGTCCGCGTCGTGCATCAGCCGCGACGGCGACAGCGACATGGTCACAAGGTACTCACTATGGTCACAAGATGGCCGAGGAAGCTGCTGAGCGAGAAGTCGTGCACGGCACCTTCCAGCCAGCCGTCCGCGTCGTGCAGCAGCCGCGACGGCGACAGCGACATGGTCACAAGGTACTCACTATGGTCACAAGGTACTCACAGCAGGTCTACCCTCCAGATGGCCGAGGAAGCTGCTGAGCGAGAAGTCGTGCACGGCACCTTCCAGCCAGCCGTCCGCGTCGTGCAGCAGCCGCGACGGCGACAGCGACATGGTCACAAGGTACTCACTATGGTCACAAGATGGCCGAGGAAGCTGCTGAGCGAGAAGTCGTGCACGGCACCTTCCAGCCAGCCGTCCGCGTCGTGCAGCAGCCGCGACGGCGACAGCGACATGGTCACAAGGTACTCACTATGGTCACAAGGTACTCACAGCAGGTCTACCCTCCAGATGGCCGAGGAAGCTGCTGAGCGAGAAGTCGTGCACGGCACCTTCCAGCCAGCCGTCCACGTCGTGCAGCAGCCGCGACGGCGACAGCGACATGGTCACAAGGTACTCACTATGGTCACAAGATGGCCGAGGAAGCTGCTGAGCGAGAAGTCGTGCACGGCACCTTCCAGCCAGCCGTCCGCGTCGTGCAGCAGCCGCGACGGCGACAGCGACATGGTCACAAGGTACTCACTATGGTCACAAGGTACTCACAGCAGGTCTACCCTCCAGATGGCCGAGGAAGCTGCTGAGCGAGAAGTCGTGCACGGCACCTTCCAGCCAGCCGTCCGCGTCGTGCAGCAGCCGCGACGGCGACAGCGACATGGTCACAAGGTACTCACTATGGTCACAAGATGGCCGAGGAAGCTGCTGAGCGAGAAGTCGTGCACGGCACCTTCCAGCCAGCCGTCCGCGTCGTGCAGCAGCCGCGACGGCGACAGCGACATAGTCACAAGGTACTCACTATGGTCACAAGGTACTCACAGCAGGTCTACCCTCCAGATGGCCGAGGAAGCTGCTGAGCGAGAAGTCGTGCACGGCACCTTCCAGCCAGCCGTCCGCGTCGTGCAGCAGCCGCGACGGCGACAGCGTCATGGTCACAAGGTACTCACTATGGTCACAAGATGGCCGAGGAAGCTGCTGAGCGAGAAGTCGTGCACGGCACCTTCCAGCCAGCCGTCCGCGTCGTGCAGCAGCCGCGACGGCGACAGCGACATGGTCACAAGGTACTCACTATGGTCACAAGGTACTCACAGCAGGTCTACCCTCCAGATGGCCGAGGAAGCTGCTGAGCGAGAAGTCGTGCACGGCACCTTCCAGCCAGCCGTCCGCGTCGTGCAGCAGCCGCGACGGCGACAGCGACATGGTCACAAGGTACTCACTATGGTCACAAGATGGCCGAGGAAGCTGCTGAGCGAGAAGTCGTGCACGGCACCTTCCAGCCAGCCGTCCGCGTCGTGCAGCAGCCGCGACGGCGACAGCGACATGGTCACAAGGTACTCACTATGGTCACAAGGTACTCACAGCAGGTCTACCCTCCAGATGGCCGAGGAAGCTGCTGAGCGAGAAGTCGTGCACGGCACCTTCCAGCCAGCCGTCCGCGTCGTGCAGCAGCCGCGACGGCGACAGCGACATGGTCACAAGGTACTCACTATGGTCACAAGGTACTCACAGCAGGTCTACCCTCCAGATGGCCGAGGAAGCTGCTGA
- Protein Sequence
- MAEEAAEREVVHGTFQPAVRVVQQPRRRQRHGHKVLTMVTSQPSASCSSRDGDSDMVTRYSLWSQGTHSRSTLQMAEEAAERVVVHGTFQPAVRVVQQPRRRQRHGHKVLTMVTRWPRKLLSEKSCTAPSSQPSASCSSRDGDSVMVTRYSLWSQGTHSRSTLQMAEEAAEREVVHGTFQPAVRVVQQPRRRQRHGHKVLTMVTRWPRKLLSEKSCTAPSSQPSASCSSRDGDSVMVTRYSLWSQGTHSRSTLQMAEEAAEREVVHGTFQPAVRVVQQPRRRQRHSHKVLTMVTRWPRKLLSEKSCTAPSSQPSASCISRDGDSDMVTRYSLWSQGTHSRSTLQMAEEAAEREVVHGTFQPAVRVVQQPRRRQRHGHKVLTMVTRWPRKLLSEKSCTAPSSQPSASCSSRDGDSDMVTRYSLWSQGTHSRSTLQMAEEAAEREVVHGTFQPAVHVVQQPRRRQRHGHKVLTMVTRWPRKLLSEKSCTAPSSQPSASCSSRDGDSVMVTRYSLWSQGTHSRSTLQMAEEAAEREVVHGTFQPAVRVVHQPRRRQRHGHKVLTMVTRWPRKLLSEKSCTAPSSQPSASCSSRDGDSDMVTRYSLWSQGTHSRSTLQMAEEAAEREVVHGTFQPAVRVVQQPRRRQRHGHKVLTMVTRWPRKLLSEKSCTAPSSQPSASCSSRDGDSDMVTRYSLWSQGTHSRSTLQMAEEAAEREVVHGTFQPAVHVVQQPRRRQRHGHKVLTMVTRWPRKLLSEKSCTAPSSQPSASCSSRDGDSDMVTRYSLWSQGTHSRSTLQMAEEAAEREVVHGTFQPAVRVVQQPRRRQRHGHKVLTMVTRWPRKLLSEKSCTAPSSQPSASCSSRDGDSDIVTRYSLWSQGTHSRSTLQMAEEAAEREVVHGTFQPAVRVVQQPRRRQRHGHKVLTMVTRWPRKLLSEKSCTAPSSQPSASCSSRDGDSDMVTRYSLWSQGTHSRSTLQMAEEAAEREVVHGTFQPAVRVVQQPRRRQRHGHKVLTMVTRWPRKLLSEKSCTAPSSQPSASCSSRDGDSDMVTRYSLWSQGTHSRSTLQMAEEAAEREVVHGTFQPAVRVVQQPRRRQRHGHKVLTMVTRYSQQVYPPDGRGSC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -