Agla013916.1
Basic Information
- Insect
- Anoplophora glabripennis
- Gene Symbol
- -
- Assembly
- GCA_000390285.2
- Location
- NW:1072-4667[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.1 3e+02 1.3 0.1 14 30 149 165 143 178 0.77 2 8 2.1e-06 0.006 16.4 0.0 21 48 214 241 205 246 0.82 3 8 1.5 4.3e+03 -2.4 0.0 21 43 271 293 262 303 0.70 4 8 0.9 2.6e+03 -1.7 0.0 16 46 306 336 296 342 0.70 5 8 0.18 5.1e+02 0.6 0.0 23 53 340 370 335 371 0.83 6 8 0.0034 10 6.1 0.0 21 47 394 420 392 426 0.86 7 8 0.17 5e+02 0.6 0.1 21 45 422 446 418 452 0.87 8 8 0.075 2.2e+02 1.8 0.0 21 43 450 472 446 478 0.89
Sequence Information
- Coding Sequence
- atggaaaatattaatattaatataacagTTAAAGATTTTCCCTATATATGCCGAATATGCCTaagtaaacaaaatttgaaacctTTTGAGCAGTCAcaagatttattaaaattgtttcaggATATTACCAATATTATTCAGattgaatTTGAAATTCAACTACCGAAAAATGTTTGTGTGGCTTGCCTCGACCAGCTGCAAAATATTTCCTCCTTTATTAATCtatctaaaaataatgataCTCATTTGAAACAGATCAtcaatgaaaatattgaaaataaaccaaaaatcttTGCTGATGAAGCGAATTTAGACTGTGAGGATATAGATTCTCATCAATGTGCTGATGAATTAGATAGTGATATAAAAATGAAGTCTGAAGATAAAATAGAAAACGTAAAAGTTGAAACTCTTTTTGAATCGAATCAAATTAAGCAAGATAAGAAGATTAGAAGACATTCTACAAAATCACAGTCTTCAAACTGCAGTATATGTGGTGaatattttacaacaaaaaataagctCCTTGAACATGAGAGACAGAATTTTAATTGCAGAACAAAGAACTTTAAATGTACACAATGTGAAAAGgcgttttttacaaaatttaaattaaaacttcaCATGAGATCACATACAAAAGAGACTCCATTCGAgtgcaatatttgttttaagaagTTTAGGCATTCCTCCAATTTAAAAAGGCATGATGACACGGTGCATAAAGGTTTAAAACCGTTCAAATGTGATGTTTGCGGTAAAGAATATTCAAGACTAGCAACAAAAACTGAGCATATGTATAGCCACAGTGGAGAACATCCATATATTTGTGTGTATTGTGGAAAATCGTTTCGAACATACTCCAACCATTTTTATCACGTATACAGACACAAAGTAAGCAATGGAGAAATAACAAAATCTAATAAGAAAAGCATTTCAGAACTAATCtgtaaaatttgtaacaaaaacTTTTCTTCGAAATCTAGCGTTTTGCAACATTTACAGTTACAtggcgaaaaaaaatttctgtgtACTATTTGTGGTAAGTCGTTTCTACGAAATCGTCAATTAGAAGACCATTCAAAACTACATACTGGAGAAAAGCCTCACGTATGCAAGTACTGTGGGAAAAGTTTCCGCCTAATTAGTGGTTATAAAAgtcatattttaatacatacagGAGAAAAACCTTACAAGTGTAAAATGTGTAATAAAGGATTTGTACAGTCTGTTCACTTAAGAAAGCATCAGAGGGTCCACACAGGAGAAAAACCGTACCAGTGCTCTTTTTGTGGAAAGTGTTTTGCAGAAAAGTGTAATTTAAAAGTGCACATTAGAATCCATACAGGAGAAACGCCTTACCATTGCTCCGTTTGTGGGATGGGCTTCTACGATTCGAGTAATATGAAGAAACACGAAAAAggacatttaattattaaacaagAATAA
- Protein Sequence
- MENININITVKDFPYICRICLSKQNLKPFEQSQDLLKLFQDITNIIQIEFEIQLPKNVCVACLDQLQNISSFINLSKNNDTHLKQIINENIENKPKIFADEANLDCEDIDSHQCADELDSDIKMKSEDKIENVKVETLFESNQIKQDKKIRRHSTKSQSSNCSICGEYFTTKNKLLEHERQNFNCRTKNFKCTQCEKAFFTKFKLKLHMRSHTKETPFECNICFKKFRHSSNLKRHDDTVHKGLKPFKCDVCGKEYSRLATKTEHMYSHSGEHPYICVYCGKSFRTYSNHFYHVYRHKVSNGEITKSNKKSISELICKICNKNFSSKSSVLQHLQLHGEKKFLCTICGKSFLRNRQLEDHSKLHTGEKPHVCKYCGKSFRLISGYKSHILIHTGEKPYKCKMCNKGFVQSVHLRKHQRVHTGEKPYQCSFCGKCFAEKCNLKVHIRIHTGETPYHCSVCGMGFYDSSNMKKHEKGHLIIKQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01014911;
- 90% Identity
- iTF_00110796;
- 80% Identity
- iTF_00110796;