Agla009951.1
Basic Information
- Insect
- Anoplophora glabripennis
- Gene Symbol
- -
- Assembly
- GCA_000390285.2
- Location
- NW:1417649-1421165[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.22 6.3e+02 0.3 0.5 19 51 252 284 248 285 0.86 2 7 0.00024 0.69 9.8 0.0 23 46 312 335 309 341 0.86 3 7 0.019 55 3.7 0.0 21 48 338 364 334 367 0.87 4 7 0.037 1.1e+02 2.8 0.1 23 46 396 419 390 425 0.81 5 7 0.063 1.8e+02 2.0 0.0 21 46 422 447 414 455 0.78 6 7 0.0012 3.4 7.6 0.0 21 52 450 481 443 483 0.86 7 7 0.012 35 4.3 0.0 21 44 478 501 476 508 0.88
Sequence Information
- Coding Sequence
- atggaagaatatgaGTTGAGAAACGTCTGCAGAGCTTGTTTAACAGAGGAAGGTGAATTTTATTCATTGTTCGTTGCCGAGGATATTTCAGGTCTTTTTCTACAATTGTCGGAAATGATGACTTCATGTGTCTCCATACAGGTGGCCCCCGGTGATGGTTTACCGGAACAGGTCTGCTCCTCTTGTGCCACCATGGCGGTTAATATGTAtctgtttaaaacaaaatgtgaAAAGAGCGATAAGGTGCTTCGAGAGAGGTTGAGAAAAGTAACCGTATATTATGAAGAAGACGGTGAAGAACGAGAAGACAACCAACATAATATTGAAATAGTTAAACCTGAAGTAACAATGGAAAATGAAGATAAGGTTTCtcaagatgaaattattttagaCGATTTAGACAACtttgattttgattataaaagcGATTGTGAAGACTTTCCAGAAATTGTGGAGCAAGGGGAAATTCAAAACATTGAAACTACCTTAAAGCagcaaaataaagtaaaagaatTTGAATGTGATTTATGTCAGAAACGTTTCAGTAGGAATGACCTATTAATAAGACATAAGATTGCACACGCAATGAAGATGGGTGAcgataaatttcaatttaatcatTACCAAATGGAAGATACCGAACATGGTAATCCACTAGTTATAAAAAGTGAGGAATTTATGTTTTCTTGTGCAGAATGTGACGtgatatttattcataaagtaGATCTGGACAATCACATAGCTCAGGAGCACGAGCAAAAGGAAGCCCATTTAAGTTGTAACGTGTGCTCTAAAAAGTTTAGTAAAATAGCCCATTTAAACAGACACCATAAAATACACTCCATGGCTAAGGCTTTTAAATGTCGATTATGCAACAAAGGCTTTACAAGGCAAGAACAGTTAACACACCACATGAATGTGCATACTGGGATTAAACCGCACACCTGTGATATTTGTTTCAAAGGGTTTAACCAGATATCCAACTTGAAAGACCACATGAGGACACATAATGGGGAGAAACCGTTCTTGTGCTCCACCTGCGGCAAAGGCTTCAACCAACTGGGAAATCTCAGACAACACACGATTAGGCACAGTGGAATTAAGGCACATCTCTGCAGTACTTGCGGCCACGGTTTTGCTAGTAAAGGAGAACTATCGGCACACCTCAGGAAACATACAGgtgcAAGGCCGTTTGTTTGTCCGGTCTGCAACCGTGGGTTCACAACCTCAAGCTCCTTAACGAAGCATAAAAGAATACATTCCGGGGAAAAACCATATGAATGCGACGTTTGTAAGATGAAATTCTCCAGGTCCGGTATCTTGGCAAGACATAAAAGAACGCACACCGGGGAGAAACCGTACGTGTGTAAATTTTGTACTAAGGCCTTTTCCCAGTCGAACGATTTAACGTCACACCTTCGAATACATACGGGCGAGAAACCTTATATATGTGACGAGTGCGGTCAGGCATTTAGGCAAAGTTCGGCTTTAAAAACCCACAAAAAGACTCATATTGAGAAAAGTACAATTGTAGACAGTAAACCGATTCTAATCAGCAACTTAGTTCGTTCTAATTTGTTAACTACCTATTCATAA
- Protein Sequence
- MEEYELRNVCRACLTEEGEFYSLFVAEDISGLFLQLSEMMTSCVSIQVAPGDGLPEQVCSSCATMAVNMYLFKTKCEKSDKVLRERLRKVTVYYEEDGEEREDNQHNIEIVKPEVTMENEDKVSQDEIILDDLDNFDFDYKSDCEDFPEIVEQGEIQNIETTLKQQNKVKEFECDLCQKRFSRNDLLIRHKIAHAMKMGDDKFQFNHYQMEDTEHGNPLVIKSEEFMFSCAECDVIFIHKVDLDNHIAQEHEQKEAHLSCNVCSKKFSKIAHLNRHHKIHSMAKAFKCRLCNKGFTRQEQLTHHMNVHTGIKPHTCDICFKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHTIRHSGIKAHLCSTCGHGFASKGELSAHLRKHTGARPFVCPVCNRGFTTSSSLTKHKRIHSGEKPYECDVCKMKFSRSGILARHKRTHTGEKPYVCKFCTKAFSQSNDLTSHLRIHTGEKPYICDECGQAFRQSSALKTHKKTHIEKSTIVDSKPILISNLVRSNLLTTYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01014855; iTF_00110772; iTF_01227560;
- 90% Identity
- iTF_01014855; iTF_00110772;
- 80% Identity
- iTF_00110772;