Agla011891.1
Basic Information
- Insect
- Anoplophora glabripennis
- Gene Symbol
- -
- Assembly
- GCA_000390285.2
- Location
- NW:27892-32616[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.48 1.4e+03 -0.8 0.1 25 43 174 192 168 197 0.86 2 10 5.4e-07 0.0016 18.3 0.0 21 49 289 317 284 322 0.92 3 10 0.0059 17 5.3 0.0 21 44 390 413 385 418 0.91 4 10 0.17 4.8e+02 0.7 0.1 27 46 455 474 450 482 0.85 5 10 0.28 8.1e+02 -0.0 0.3 21 44 477 500 458 508 0.84 6 10 0.023 67 3.4 0.2 10 48 493 532 485 534 0.82 7 10 0.00014 0.42 10.5 0.1 21 48 534 561 530 563 0.89 8 10 0.066 1.9e+02 2.0 0.0 24 44 806 826 799 832 0.85 9 10 0.018 51 3.8 0.0 21 52 915 946 912 948 0.88 10 10 0.0019 5.6 6.9 0.2 21 48 971 998 960 1003 0.88
Sequence Information
- Coding Sequence
- atgaataataaatatatgaatatttcAATTCACGATTTTTCAAGAATATGTCGGATCTGTCTATTATCCAATGAATCTAAAGTAACTTCAATAGAATCCTTAGATTTATATGTAAAAGTTACTAATATTCAGatAAAACAAGATGATAATCTTCCTAAAAATATATGTGAAACATGTGTGATCGAGTTGAAAAGTGTGGcatcttttatagaaaaatgtaaagaaatcGATATATTTTTAGTGTCAATTTTAGAGAAATCCAAACAAGGTAGCTTTAGCTACGATATACCCGATTATGAATCAGACTCTCACTCGTATGACGATCGTCCAataaaacttgaaaatgaagatTCATTTGCCGGTGCCAAAGACATTAAATTTGAAAGTGatacaaaaaatgtacaggttaattttaatgattctgtattaaaacattttcactGTGCAAATTGTGGGAAAGGATTCTGTACCAAAAGAGAATTAGTAGTACACATAAAGACCCATACGGAAACAAAATCGTTCACTTGTTCATTCTGCAGTATGAAGTTTAGATTTAGACAATCATTGCAAAGGCATCGTCTGATTCACAGTACCATAAGGTCCTATAATTGTGATATTTGTGGGAAAGGGTTCAAGAGGGCATTTTCAAGAAATAAGCACAGAAAGATTCATAACAGAGTAAAAATGCTTCTGGACACTGACCTTAAATACAGCTGTACTCAATGTGACAGAGTTCTAACCTCTCACTCGGCACTGAGCAGTCATATGAAAACTCACACCGGGGAAAAACCTTATTCTTGCACATATTGCGACAAACGTTTTCCTTATGTTAGCAGCTTAACCGTTCATACTCGCCTCCACACAGGTGAAACTCCTTTTGTGTGTCCAATATGCAATAAGGGCTACCGCAGCTCGACAAGTCTCAAAAAACATAAGGAAGTGAAACACTTTGAAATCGAAGATGTTAAACAAGAAGACGAGAACGACGACAGAAACGCAGATTCAGATAAAAGGGAAtgtaaaatttgtaacaaaatacTTCACAAACACGGGTTTGGTACACATATGAGAATTCATACAGTCGAGAAGAAGAAGTTCGTGTGTAcgttttgcaataaaaatttccagaaaaactccCACCTGGAGAGGCATATTAGGATACATACAGGGGAAAGGCCGTACGTCTGCAAACTGTGCAGTAAAACGTTCAAACAGGACGGAGACCTAAAACGCCACGTCCTAACGCACACCGGCGAGAAACTATTCCAATGCCAACACTGCGGCAAGCAATATTACACAAAAGGCTCGCTGGACACTCACATGACCGCCCACACGGGAATAAGGCGGCCGGTCAATTACGAGTGCAACATTTGCAAGAAATCATTCAGACAATGTACCCACTTCAAAACCCACATGAACTCTCACACTGGGGAAAAGCCTTATCTGTGTACGATATGCGGGAAGGCCTTCACCGCAAGCGGAACGTTAAAAGTGCACACTCGGATTCATACGGGGGAAACCCCGTTCGTTTGTTCGCACTGCAGCAAAGGGTACAATAATTCGAGCAGCTTGAAACGTCACATCATGAGGAATCATACGGGAGAGAAACCTTATGTTTGTATGATTTGTAACAAGGGTTTCCACGACTCCACTAATTTAAAGCGGCACATAAAACGTGTGCACTCCGTCGTAGAGATCAAGAAAGATAATGAGGTTGCAGATGCGACAAAATCTGTACTGATatgtgtcTGTTGCACTGTTATGGCaaataaagaaacaaatatCCACGTAGCCTATGAAGACTTTCCAGTAATCTGTAGAGTTTGTTTACTCTACAACGATGTACAaccttttgaaatgaaattattagaactttttaaagctataataaataattcagaagaggaaattgaagaaaaactgCCCCATAACATCTGCGAAATCTGTTTAGTGCAATTGAaagatttcgaaaattttattcataagTGTAGAATAAACGAAGCAACattaaaaagtgtatacttGGAAAGAAAGAATAAGTATGTTGATTCGTCGGATGCAGATAGTGACGTAGAAGACAAGTTTGATCCAGATTATGTAAAGTGTGAGGAGGAAGAAGAAACAATCAAAACTAATACTAAGTTAAATAGAAGAGAAGAGGTGCAATCAGACAGTGACAGTCCCGAGTCAAAAAAGCAATTAAGGAGAGCCCttagaaaaataaagaacaaagcAAACCCAGTAAAATgtgaaatatgcaataaaacgTTTTATGGAAAATCCGCTTTCGCCAATCACACTAGAACGCATAAACACAAACGAGAACACAAGAAATTCCTGTGCAACatatgtggaaaaaattttatcaagaATTCTCACTTGGAGAGGCACATCCGGACACATACCGGAATAAAACCTTACGAATGCAAAGACTGCGGGAAACACTTTGGTCAAAGTAACGATCTTAAAAGACACCTTCTAACACATACACGAGAGAAAGTGTTTCAATGTAACCAGTGTGAAAAAGCCTTTCATCAGAAATCCTGCTTGGACAACCACATATTAACACACACGAATGAAAGAAATTTCGAGTGCAGTTTTTGTGATAAAAAGTTTACGATGAAGGCTTACTTAGAGGTCCATACTAGAACTCATACGGGTATAAAACCGTACCAGTGTTCCCATTGCGAAAAGCAGTTCTACCAGAAGAGCGGGTTAAACAATCATATTTTGACCCATACGGGAGAAAAGCCTTACAAATGTACGGGATGTGAGAAAACTTTCATCCAATCTAACCATCTTAAGGAACACTTGCGGATTCATAGCGGAGAAAAGCCTTTTTTGTGTACTTACTGCGGGAAGGCTTTCGCCTACAGCAGTACGTTGAAGGTGCATTTAAGGCAGCACACTGGTGAAACACCGTTCATTTGTTCGTATTGTAATAAGGGGTTTCATGACGCAAGCAATCTGAGGCGACACGTTCATCGGAATCATACAAATATCAGACcacccaaaaataaaaatgtcagtcaaaaCATAATGAGCCAATATTAA
- Protein Sequence
- MNNKYMNISIHDFSRICRICLLSNESKVTSIESLDLYVKVTNIQIKQDDNLPKNICETCVIELKSVASFIEKCKEIDIFLVSILEKSKQGSFSYDIPDYESDSHSYDDRPIKLENEDSFAGAKDIKFESDTKNVQVNFNDSVLKHFHCANCGKGFCTKRELVVHIKTHTETKSFTCSFCSMKFRFRQSLQRHRLIHSTIRSYNCDICGKGFKRAFSRNKHRKIHNRVKMLLDTDLKYSCTQCDRVLTSHSALSSHMKTHTGEKPYSCTYCDKRFPYVSSLTVHTRLHTGETPFVCPICNKGYRSSTSLKKHKEVKHFEIEDVKQEDENDDRNADSDKRECKICNKILHKHGFGTHMRIHTVEKKKFVCTFCNKNFQKNSHLERHIRIHTGERPYVCKLCSKTFKQDGDLKRHVLTHTGEKLFQCQHCGKQYYTKGSLDTHMTAHTGIRRPVNYECNICKKSFRQCTHFKTHMNSHTGEKPYLCTICGKAFTASGTLKVHTRIHTGETPFVCSHCSKGYNNSSSLKRHIMRNHTGEKPYVCMICNKGFHDSTNLKRHIKRVHSVVEIKKDNEVADATKSVLICVCCTVMANKETNIHVAYEDFPVICRVCLLYNDVQPFEMKLLELFKAIINNSEEEIEEKLPHNICEICLVQLKDFENFIHKCRINEATLKSVYLERKNKYVDSSDADSDVEDKFDPDYVKCEEEEETIKTNTKLNRREEVQSDSDSPESKKQLRRALRKIKNKANPVKCEICNKTFYGKSAFANHTRTHKHKREHKKFLCNICGKNFIKNSHLERHIRTHTGIKPYECKDCGKHFGQSNDLKRHLLTHTREKVFQCNQCEKAFHQKSCLDNHILTHTNERNFECSFCDKKFTMKAYLEVHTRTHTGIKPYQCSHCEKQFYQKSGLNNHILTHTGEKPYKCTGCEKTFIQSNHLKEHLRIHSGEKPFLCTYCGKAFAYSSTLKVHLRQHTGETPFICSYCNKGFHDASNLRRHVHRNHTNIRPPKNKNVSQNIMSQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00110749;
- 90% Identity
- iTF_00110749;
- 80% Identity
- iTF_00110749;