Agra025999.1
Basic Information
- Insect
- Anoplolepis gracilipes
- Gene Symbol
- -
- Assembly
- GCA_031304115.1
- Location
- JAPWJP010001953.1:514423-517640[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.038 6.9 8.6 0.1 3 23 445 467 444 467 0.94 2 10 0.0022 0.4 12.5 1.4 1 23 473 497 473 497 0.98 3 10 0.00086 0.16 13.8 0.9 1 23 503 527 503 527 0.94 4 10 0.00032 0.058 15.1 0.2 3 23 535 557 533 557 0.92 5 10 6.3e-05 0.011 17.4 1.7 1 23 564 588 564 588 0.97 6 10 0.00026 0.047 15.4 0.7 2 23 596 619 595 619 0.95 7 10 4.5e-05 0.0082 17.8 4.9 1 23 625 649 625 649 0.97 8 10 7.1e-06 0.0013 20.3 0.6 1 23 655 679 655 679 0.96 9 10 6.9e-05 0.012 17.2 0.9 1 23 685 707 685 707 0.99 10 10 0.22 41 6.2 0.0 1 23 794 819 794 819 0.97
Sequence Information
- Coding Sequence
- ATGTCTTGCAGAGGAGCCGCCGCCATCGTCGCTTGCACGTCGAGACGACGCAGCCGAGAGAAGATCCACTCCGAGGGAACGGAATGCGTACCCTCCGACACGATCGTTGCCTCGAAGACGGAAGGGATCAATAAGAAAGATAGAAGAGGTAGGAGAAACGAGGCTTGGAACCAGTCGACGGTCAGCAAGAGCGCCGACGTCGAGACGGTAGCCGATTTTGAGAAATGGCTGAAGATGCGCAGCACGGAGTCATCGGTGTCGTCGAACATGGACCTGGATGCGGTCAAGGTAGTGGAGGGCGTCGACCGGTATTTAGACGAGGAAGTGTTATCACATGGTTACTTTCTAAGCAAAGATCCATATGGTTTGTCCCTTGACATCGATCTGGCCGACACCAAGAAGCTCAATCTGTCATCGGGCTATGACCCAATACTGCAGGATCTAACACAGAATGATAATCGATTATTGGAACCTCCATGCGAAAAAGTTGTCGATGAGTTTATGCTGCCAGAATTTCAATTAGATCATCTAGATCCATTGGCGGCGCTCTCATCGGATGACATGATGGTGGCAGGTGAGATCCTGCCATCCACAAGCAATCAAccgatattaaatcaaatggAGAATCAAGATGTTGAACAAATTACTCCAAAAGTTCTAGAGCAGAACAGTGAAGTACCCTGCGAGAAATCTACGCAGGTTGTCCTCAATGAAATACCGGTGAATTTAGGAGCTATGAACAAGATGGAGGATATAAAGTCAGAACAGGAAACTACGATACAGTGTTCAAGAAGTTCTTCGGAACTCTTAATCGAAGCGCTATCACCAATGGAGGAGAACTCGTCGAATTCCATAGAAGCAGATACTCAAAGTAGCATAATAGAACAATTGAAGTCGAAGACTAGAATGAAGCTTGAACCGCGTATCATCAAAAAGCGTCGGCAAATGACGGAGCAATTGGAAAAGAAGCTTGACAAACACATCAACGGAAAAAGTTTCACCGATGCGGATTCGCAGGACGGCGTAATGGCTGTGGTTGCCATATCTACCGATAAAATATCCAATACGACGCAGATCGTTATTAACACCGGCACGGAGAAGCAGATCTATCAGGGCAAGACTTCGGAGCTGATCGAGGCAACGGGCAACTTTCCGAAATTGCCCAAGATAGATACTTCTGCGGCGATTTGGAACGGTAACgtcgaatataatattgataataatccgAGTAGCTCGTACGAAATTGTCATATCCAATGCGCTGGAGGAACTAGGCATCACTGACGATAGTTTGCAACCTATAAGCGCCACCGAACATGACAAGGTATGGCTCTGCCCACGAGCCGGCTGTAACAGACAGTTTGGCAGATTATACACTTTGAAAGGTCACTTGCTGGCTCATTATGGAGTTAGGCCGTTTAAgtgtGACTTTGAAGGCTGCACTTGGGCCTTTTATTCTGAATTCAAGTTAAAAAGACACAAGGAAACACATTTGAAGCGCAAGGATCACGTTTGCCAAGTAGAGGGTTGCAATCGTCGCTTCACCACCGTCTATAATTTATGGAGCCACGAAAAACTGCATAGTCGTCCAAATCGGATTGTTTGCCAGGTACCGAATTGTGGCGAAAAATTTCAGACGAAGCGGGCACTTGAACTACATATGAAATCGCATGATCAACGCCACGCGCCTTATGTTTGCCAACACGAAGGTTGTGGCAAGCGTTACTATAGCAGTAACGCGTTGACATCGCATCAGCGATCGCACAGCTATAAAGAAGTGGACATCAAATGCTCGTGGCCGGGCTGCGGCAAAGTTTTCGATAAACCATGTCGACTTAAAGCTCACACGCGTTCTCATACCGGCTGCAAACCTTACCATTGTACGTTTCAGGATTGCAAATGGGCATTTTCATCGTCCAGTAAGCTCAAGCGCCATCAGAAGAAGCATACTAACGAACGAAAATTTATGTGTGACGCACCAGACTGCGGCAAAGCTTTCATGCGCTCGGAACATTTAAAGGAGCATCGGTTGACACATAAGGAAGGTCGCTTCTTCCAATGTTTTGTATGTGACGCCCGATTCTCTGCCAAGAGCAgcttatatgtacatattaagaaGCATCAGCAGACCAAGACGGACGTAAGCATAATCGACAATGTGCCGATAGAATTCGGCTATACATCCGGCGATCAGAAACGTGGAAGAACAAAAGAATCCGATTGCTCGCGAGTGAAGCCGATCGTCAAGTCGAAGCGAAAATCCATAGAACTAACAAATGCTATAGAAACCGTTACGAAGGAAGACGACATTGAAAAGCCGGATATGATATGCGATATCAGTGCGCGTTTCCAGAATTCTCAGGATCAACTAGAATGGTTGTATCGTTGTCCGATAGAGATCTGTGATTACTTGATTGGAAACGAGGCGAGTCTACGTGAGCACCTACTGAAGATGCACAGTATACGTTGCGACAATTTGCTGGATAAACCTGCGGATGTTGCGGATGCAGACTATATTCTCTACGCGGTACACGAGTCGCCCCCAACCTCGCCCAACGCCATCGAGGAAGAAAAGATGGTTATGGTGACACCATGCGACGCCGTTATCCTCGGTACGTCGTCAAACGCGGATCGTCGATGTTTACCGGAACCGGAACCGCCACCTTTCAACACCTTACTTAAGAACTCAGAATCGTTACGTGCCGATGATGTGTGTGCCGAGCAAATTGACAAAGGAACTTTATCGATGAAGAAAGAGCAGAGCTCCGCGAGGACAGATCTGACATATTCGGATTGGTCCAGGCTGAAGAAAAATGGCACATTGACGGATTCGTTAGTGACAACAAACACATCGGACGTTGCACTGGGCGTGAATAGCGACTTGAGCGAGAATTTGTTACTCACGGAGGAACTACCATCCATGTACTATCAAGACGATGTGGCAGGTACGGAGTATCAGGTGTTATTATTGGACTCGAGTCCGCTTGAGAGTACCGTTAATTTGCGCGGTCTCGAATAA
- Protein Sequence
- MSCRGAAAIVACTSRRRSREKIHSEGTECVPSDTIVASKTEGINKKDRRGRRNEAWNQSTVSKSADVETVADFEKWLKMRSTESSVSSNMDLDAVKVVEGVDRYLDEEVLSHGYFLSKDPYGLSLDIDLADTKKLNLSSGYDPILQDLTQNDNRLLEPPCEKVVDEFMLPEFQLDHLDPLAALSSDDMMVAGEILPSTSNQPILNQMENQDVEQITPKVLEQNSEVPCEKSTQVVLNEIPVNLGAMNKMEDIKSEQETTIQCSRSSSELLIEALSPMEENSSNSIEADTQSSIIEQLKSKTRMKLEPRIIKKRRQMTEQLEKKLDKHINGKSFTDADSQDGVMAVVAISTDKISNTTQIVINTGTEKQIYQGKTSELIEATGNFPKLPKIDTSAAIWNGNVEYNIDNNPSSSYEIVISNALEELGITDDSLQPISATEHDKVWLCPRAGCNRQFGRLYTLKGHLLAHYGVRPFKCDFEGCTWAFYSEFKLKRHKETHLKRKDHVCQVEGCNRRFTTVYNLWSHEKLHSRPNRIVCQVPNCGEKFQTKRALELHMKSHDQRHAPYVCQHEGCGKRYYSSNALTSHQRSHSYKEVDIKCSWPGCGKVFDKPCRLKAHTRSHTGCKPYHCTFQDCKWAFSSSSKLKRHQKKHTNERKFMCDAPDCGKAFMRSEHLKEHRLTHKEGRFFQCFVCDARFSAKSSLYVHIKKHQQTKTDVSIIDNVPIEFGYTSGDQKRGRTKESDCSRVKPIVKSKRKSIELTNAIETVTKEDDIEKPDMICDISARFQNSQDQLEWLYRCPIEICDYLIGNEASLREHLLKMHSIRCDNLLDKPADVADADYILYAVHESPPTSPNAIEEEKMVMVTPCDAVILGTSSNADRRCLPEPEPPPFNTLLKNSESLRADDVCAEQIDKGTLSMKKEQSSARTDLTYSDWSRLKKNGTLTDSLVTTNTSDVALGVNSDLSENLLLTEELPSMYYQDDVAGTEYQVLLLDSSPLESTVNLRGLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00280152;
- 90% Identity
- -
- 80% Identity
- -