Basic Information

Insect: Anoplolepis gracilipes
Gene Symbol: -
Assembly: GCA_031304115.1
Location: JAPWJP010002103.1:2145404-2154468[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.64 1.2e+02 4.7 0.4 6 20 316 330 315 332 0.94

2 9 1.1e-06 0.00021 22.8 2.5 1 23 566 588 566 588 0.98

3 9 2.8e-05 0.0051 18.5 2.0 1 23 594 616 594 616 0.98

4 9 1.7e-06 0.00032 22.3 0.3 2 23 625 646 625 646 0.98

5 9 5.8e-05 0.01 17.5 0.1 3 23 654 674 652 674 0.97

6 9 1.8e-07 3.3e-05 25.3 3.0 1 23 680 702 680 702 0.98

7 9 3.1e-06 0.00057 21.5 0.7 1 23 708 730 708 730 0.98

8 9 4.8e-05 0.0087 17.7 7.4 1 23 736 758 736 758 0.98

9 9 0.00042 0.076 14.8 1.4 1 21 764 784 764 785 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.64	1.2e+02	4.7	0.4	6	20	316	330	315	332	0.94
2	9	1.1e-06	0.00021	22.8	2.5	1	23	566	588	566	588	0.98
3	9	2.8e-05	0.0051	18.5	2.0	1	23	594	616	594	616	0.98
4	9	1.7e-06	0.00032	22.3	0.3	2	23	625	646	625	646	0.98
5	9	5.8e-05	0.01	17.5	0.1	3	23	654	674	652	674	0.97
6	9	1.8e-07	3.3e-05	25.3	3.0	1	23	680	702	680	702	0.98
7	9	3.1e-06	0.00057	21.5	0.7	1	23	708	730	708	730	0.98
8	9	4.8e-05	0.0087	17.7	7.4	1	23	736	758	736	758	0.98
9	9	0.00042	0.076	14.8	1.4	1	21	764	784	764	785	0.94

Sequence Information

Coding Sequence: ATGACGGAGGTTAATTCAAATCGGATCCCTGATCTCGGCGACCAGCCAATAGCGgagGTATTGTTGGCGCATAGCAAAGCCACCGCTCATTGTGAGCCCATCACGATGATTCTAGCTGAAATGGAAGCGCCGGAACTCGCGGCTCTTCTTGGCTTCGTCTACACTGGAAGTGCTACGGTTCCTCGAATGCGATTAGATGCGTTTTTACGCGCTGCCGAGACCCTACGGATACGACTACCACCGGTGCCGGTGACAACGACCTGTGGCGAGCGAGTGCATTCGGACTGTAAACTGGAGGACGTGAAAGACGTCAAAGTTAATCCCAAGTACTTGCGGTGCGATCAGTACCCTTGGTGCAGATCGAGCAGACCGTCTTACGAAGAGCCGCTCGACAGAAAGGAATCTAGGATAATCCCGACTGATAGCAATAGGAACGTCTTCAGGGACGTCGGAGCGCTTCGTGAAGTTAACAATCCTGGTCCCAGCTCGTTTGATCCAAATTGTCCGAGTGGATGGTCGATCGATAGTTTCGTATATCAGGATAGAGCGATAGATGATGTTTCTGCAGAGAAAGATCACAGCTCGGTGATAATCGCCGACAAAAATCGGATGATAGCTTCTAGTAGCGAATCATCCTTCGATGTTTATCAGCGAGACGCGTGTCTTCCCGATAGATCGTTCGCGGAAGGATACGGTAGTCTTGATCCTTCGGAGAGGATCAGAACATCCGGATACGAGAGATCGCAAATGAATCGTTCGACGGAGAAGCCGATCACGAACGAAGACATCCACGTGACAGGATCAGGAGGCGACTCCTACGGAAGGACATGCGACGAATGTCCCTACCAGGGTACGATGCCGTTGTCGTCCTTGCAGTGTCGGACAAGGTCGTTCGAGAGGACGACCGATTACAGTTCGCAGACAGCAACGGGCGAGGACCTCAGCTGCGGCGAAAGTTGCTGTAGGTGGAGGACCGTTCGCAGACACGTGGCCAATCGCGTCACCGCGTCGCCGTGGCGCCAGATTATCAGGCCTCATCATTCACCGAGGACCCCGCGGTCTGTCATATCCCAACGTCACGTCGATGACGAAATTCAAAAGAAGCCTCTAACTCCAGAACCAACTCGATCTACGGTAATATCGATGAGCCCGAAGGTTCACTCGCCGAACAGGAATACGCCGAGAAATGACGGGTTTTACGCAGTCGAAGTTCCTACCAATTGCGAGATGAGTGTTAACAATGATACGAGATCGTGCGAGATAGTCAGTGGTCCAGAGACGAACGTGCAGGAGATCTACCGATCGCCACCAGCTGCATTCGCACCCTGCAATCAAATCGCGCCACTTGCGAGCGTACCTAGAAGCAACGAATCGCCCTTTCAAAACGTCAGCAACACGCCTACGCGATTGCTGCCCGCCGTTAACGAAACCGTTATCACGAATGCCAACGGATATACGACACCGATTCCGGTTCCGCAAACACCACAGAAACACGAATTATCGCATCCGATCAGCAGACTCTGCGACACGATCGAGTCGGACGAGAAGAGGGAGTCCTCTTCGAGGATGGAGATGACGGAGAAAAATGAGGAGGAGCGAATCGCGAGGATTCTTGTTAATAGcgataataacaataacaacgAGACGATCGTCAGCACGATCGAAGGGGCTCACCGTGGACGATTGGCCGACGATCACAGGTGCGATCAATGCGGAAAGACTTTCGTCACGAGAGCCTCGCTcaagGTGCACAGCCGAACACACTCCGGTGAGAAGCCGTTCCGCTGCGCCGATTGCGGCAAACAGTTCTCGCAGCTGCGTAACTACAAGTACCACCGTAGCGTGCACGAGGGCACGCGGGAGTTCGCGGCGACTTGTCCGGAATGCGGCAAGTACTTCAACGATCGCGGTTATCTAAGCTCACACATGAAGATCCATCGGAATCGCAAGGAGTACGGTTGCGCGGAATGCGGCAAGAGCTTCAACCAACGCGTGGCCTACAACATGCACGTGCGCATACACACGGGCGTGAAACCGCATCAGTGCGAGCAATGCGGTAAAGCGTTCTCGCGGAAGATGCTGCTCAAGCAACATCTCAGGACCCATTCCGGCGAACGACCGTACCAGTGCCAGGTCTGCCAGAAAGCGTTCGCCGATCGCTCCAATATGACCCTCCACACCAGGTTGCACTCCGGCCTGAAGCCGTACCAGTGCAACCTCTGCTCAAAGGCCTTCACCAAAAAGCACCACCTCAAGACACACCTCAACTATCACACTGGCACTAAGCCGTACTCCTGCTCCAACTGCGGCGGCAGGTTCTCGCAGAGCAGCAACATGAGGACCCACTTCAAGAAATGTATCGTCAACAATACCGTAGGCTTGGCCAAATCTAATGATGAGACTAGCGTCGATCGCGCCGATACCGAGGGCAACGTGGCCCTGACACCACCGAATTCTGATCAGGAGTCCAGCATTATGACACCGATACAGAGCAACACGTAG
Protein Sequence: MTEVNSNRIPDLGDQPIAEVLLAHSKATAHCEPITMILAEMEAPELAALLGFVYTGSATVPRMRLDAFLRAAETLRIRLPPVPVTTTCGERVHSDCKLEDVKDVKVNPKYLRCDQYPWCRSSRPSYEEPLDRKESRIIPTDSNRNVFRDVGALREVNNPGPSSFDPNCPSGWSIDSFVYQDRAIDDVSAEKDHSSVIIADKNRMIASSSESSFDVYQRDACLPDRSFAEGYGSLDPSERIRTSGYERSQMNRSTEKPITNEDIHVTGSGGDSYGRTCDECPYQGTMPLSSLQCRTRSFERTTDYSSQTATGEDLSCGESCCRWRTVRRHVANRVTASPWRQIIRPHHSPRTPRSVISQRHVDDEIQKKPLTPEPTRSTVISMSPKVHSPNRNTPRNDGFYAVEVPTNCEMSVNNDTRSCEIVSGPETNVQEIYRSPPAAFAPCNQIAPLASVPRSNESPFQNVSNTPTRLLPAVNETVITNANGYTTPIPVPQTPQKHELSHPISRLCDTIESDEKRESSSRMEMTEKNEEERIARILVNSDNNNNNETIVSTIEGAHRGRLADDHRCDQCGKTFVTRASLKVHSRTHSGEKPFRCADCGKQFSQLRNYKYHRSVHEGTREFAATCPECGKYFNDRGYLSSHMKIHRNRKEYGCAECGKSFNQRVAYNMHVRIHTGVKPHQCEQCGKAFSRKMLLKQHLRTHSGERPYQCQVCQKAFADRSNMTLHTRLHSGLKPYQCNLCSKAFTKKHHLKTHLNYHTGTKPYSCSNCGGRFSQSSNMRTHFKKCIVNNTVGLAKSNDETSVDRADTEGNVALTPPNSDQESSIMTPIQSNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00280128;
90% Identity: -
80% Identity: -