Basic Information

Transcription Factor Domain

TF Family: GCFC
Domain: GCFC domain
PFAM: PF07842
TF Group: Unclassified Structure
Description: This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.00044 6.6 7.5 0.5 1 24 47 70 47 79 0.88

2 4 8.3e-21 1.2e-16 62.4 1.8 68 133 87 151 74 155 0.90

3 4 1.5e-16 2.3e-12 48.4 5.3 206 275 170 238 167 238 0.96

4 4 0.027 4e+02 1.7 0.2 158 190 251 282 240 297 0.54

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.00044	6.6	7.5	0.5	1	24	47	70	47	79	0.88
2	4	8.3e-21	1.2e-16	62.4	1.8	68	133	87	151	74	155	0.90
3	4	1.5e-16	2.3e-12	48.4	5.3	206	275	170	238	167	238	0.96
4	4	0.027	4e+02	1.7	0.2	158	190	251	282	240	297	0.54

Coding Sequence: ATGAGGCATTTAAAGGGCATTGTGGTTGCTTTTTTAGAAgctgaaaagaatttatcgaAAGTCGTGAATCAACGTGGTCAATTATTTGATATCTCAGAAAATATACCCATGATCACGGACGAAATAAACGAATTGTCTCTGCAAGAAACCACGgaagcttttaaaaatttgcaacacAAGTACTGTGAAGAGTACAAAACGTACGAAGagaatagAACTAGTAATACCCACAGACATCTAGATTATAATATGGATGTCTGTGATAGTACCACACTCCAAACACAGACTATGCACCCGTACGATCAATTAGTATGGGACGCGTGGATGCCATCAATTAGACGAGCCATACAGCAGTGGACATGCAGGCAGCCTTATCCTCTGATTGAACTAATAGAACATTGGATGCCATTATTGCCTAATtggattttagaaaatatattagatacatTAACACTATATCCATCCATGTATGAATTCATCCTTGGTTGCCATTATTACGAAATCGCAAAAGTGTTTGCCAAGGAGGATATGGAAGCGTTTTTAGTCAAAAACATTCTACTAAAATTGGAAAtagttttaaacaaatttgttataaagcCATGTCAACAGCATATAGTTTGGTGGAATTGGGTGAACGAGTGGAAGAAGCTGATTCCTGTTCATATCATGGCAGGACTACTCAGAGCCTTTTTTCCGAAATGGTTGCATGTTTTGGCAGTATGGCTCAATCATTCACACAATTTCGATCAAGTGTCAGTTTGGTTTAATGGTTGGAAAAATATGTTCGGCAATAAGTTATTGGCGGAATCAGTGATAAAAGAGCATTTCCAGAAAGCATTGGACATGATGAATAGGTCCGTCATCAGGTTACAAAATCATCAACTTGGACTGGAACACGTTTCGTATTTAACAAACCTAGAGAGCACTTAG
Protein Sequence: MRHLKGIVVAFLEAEKNLSKVVNQRGQLFDISENIPMITDEINELSLQETTEAFKNLQHKYCEEYKTYEENRTSNTHRHLDYNMDVCDSTTLQTQTMHPYDQLVWDAWMPSIRRAIQQWTCRQPYPLIELIEHWMPLLPNWILENILDTLTLYPSMYEFILGCHYYEIAKVFAKEDMEAFLVKNILLKLEIVLNKFVIKPCQQHIVWWNWVNEWKKLIPVHIMAGLLRAFFPKWLHVLAVWLNHSHNFDQVSVWFNGWKNMFGNKLLAESVIKEHFQKALDMMNRSVIRLQNHQLGLEHVSYLTNLEST

Sequence clustering based on sequence similarity using MMseqs2