Basic Information

Gene Symbol
Rreb1
Assembly
GCA_013141755.1
Location
CM023250.1:6957455-6965453[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.0005 0.029 14.6 0.3 1 23 237 259 237 259 0.98
2 13 0.00051 0.029 14.6 0.9 1 23 275 297 275 297 0.97
3 13 1.8e-05 0.0011 19.1 5.2 1 23 303 325 303 325 0.98
4 13 0.17 10 6.6 4.4 2 21 546 565 546 566 0.94
5 13 0.0063 0.36 11.2 0.1 1 23 873 895 873 895 0.98
6 13 4.1e-06 0.00024 21.2 0.6 1 23 904 926 904 926 0.99
7 13 0.0023 0.13 12.5 2.3 1 23 932 955 932 955 0.97
8 13 0.0013 0.076 13.3 2.1 1 23 1521 1544 1521 1544 0.95
9 13 0.00012 0.0069 16.6 0.3 2 23 2027 2048 2026 2048 0.97
10 13 0.61 35 4.9 5.4 1 23 2054 2077 2054 2077 0.96
11 13 8 4.6e+02 1.4 2.3 1 23 2287 2310 2287 2310 0.85
12 13 0.012 0.67 10.3 0.5 3 23 2373 2393 2371 2393 0.96
13 13 0.0034 0.19 12.0 5.0 1 23 2399 2421 2399 2421 0.99

Sequence Information

Coding Sequence
ATGGAAGCAGGAAGTACGAGTGTGGGAGTTGCCAATAAGAATGTTGCTACCACCCCATCCACGGACACTGGCAGCGACGGGACAGTGGACGGGTATATGCGTGCAGCGATAAAAGTTGAAACGCCAGATGCAACGGAAACACCTCCAAATCACCCAGACCACACCACAGCCGATCGGGCCGAGGAGGAAGAAGCGGaggcggaggaggaggaagaggaggcaGTACAGTCACCACCGGCACCAGACACGCTGCTGGAGGTCGGCAAGAGTGCGTCTGGGGAGGAGGATGGTGACAGCACAGCCGCATCGGCAAAGCACAACCATTTCGATCGTCAGCAGcggcgcagcagcagcagcagcggcagcaatCAAAGCCATCACCAGCAGTCGGCCAACAGGCAGCGGAGCGACCATCTGCACCAGCTAACGGACGATATGCTGCGACGGAAAAcgatgaacaacaacaacagcaacactgtgccgaacaacaacaacagcagcagcacccgcGGTGGTAAACGATCGCTGGAATCGACGGCAGaaatgctgctgcagcagcaacgccGGCAGGCGGCGGTGGTGCCGGCCACGGCAACCACTTCGTCCGGCAACAAGCGACGAGGGTCGGCGGGTCCACCGCAGCGGCGGACAGAGGACgaggaggtggaggaggaggcgaCCGCATCGCCGGCCGAACCGGGCAAGCGTTACGTCTGCCCGATCTGTGACTGCGTGTCACCGACCCAGCGTGCCTTCACCGATCACATCCGGCTGCACAATGCGGAGTCCGAGTCGGCGGCGACCGCGGTCGCATCCGCCAGCTTTTGCTGCAAAATCTGCTCCAAGGTGCTGTCGTCCGCGTCGTCACTCGATCGGCACGTGCTGGTGCATACGGGCGAGCGGCCTTTCAACTGCAAATACTGCAGCCTCACGTTCACCACCAACGGCAACATGCATCGGCACATGCGCACCCACAAGTATCCGTCCGGACGTGACAGTTTCGAGAGcgatgctggtggtggaggtaGTGCCGGTGGCGTAGGTGCGGGAGGCGGCTCATCCTCCGATGGTAGTGGTGGGGGAGGAGGGAACAAGACTGGCCGCAACAGTGGGCGATCCGGTGCCGGCGGTTCCACAGCAGCAAGCCGTCACTATcgcaagaagaaggaagaggaggacccggaggaagaggaggaagacgcCGATGAGGAGGATGACTACCGGCAgccaaagaggaagaagaagcgtgCACTGTTCACTAGCGGTGCGGGCGGGGAGCAGCAGGGCGGGGAGGAGCATACGAGTACGAGGCGCCGGAAGCAGCACGATCTGCTGATGCTGGACGCCGGCATAGAGCACCAGCACGTCCAGGAGGAGGAAGCAGATGAGGAAGATGGCGAGTTTGACGAGGAAGAGGAGCTGCTCGGTGGTGGGAAGCGCAAGGTAACCTTGGGCGGTGCAGGTGACCGTTCACACCAGTATCGCAAGGTGCGcaccatcaacaacaatcTGCTCGAAGGTTCGGTGGTGGAAAGTGGCCAACGGtactgctgtccggtgtgcgTGCGGAACGATTTTGCCAGCATGCTCGCCCTGGAACAGCATCTCGACCGGGAGCATCCGAACATACCGGCCAAGTGCCGGCACTGTGAGATCATGTTCCGCAGCCACAAAGCACTGAATGCGCACCggtgcagcaacaacaactatCAAAACATAACGCCCGGCTTCAAGGATCTCACGTTTGTAGACTTTTCCAGCGAAAAGTTTCCGCTGATCGCGAAAAACCTGTGCGAACAGAGCATCCGGACGCCGGTGACGAGCCAAAAGTACGAGTGTGCCCGATGCTATCGAGCGTTCCCCTGCTCGAAGACGCTCTCGATGCACTCTGCCGACTGTTGCagcagtggtggtggaggagctGCCAGTGGCGAACGGTCGGCCGGACAGAGACGCAAGCGGGCGCCGAGCGAGTCGGACTCGTCGGATGTGTCCGGTTCGGATATGGGTTCGTACTACGAGGATCGCCGAACGTTCGACGACGAACAGCACGGCGATCagcgccaccaccagcagcaacagcagcacgtacagcagcagcagcagcagcagcagggtcaTCTGCGCCGTGAGGACTTCTTTGCCAACCTCGATCTCCAGAACCGTTCCGTGGGGACGTTTTCGGAGGCACCAACGACACCCTCCTCGCTGGACAAATCGTTCTCCTCACCGGTGCCGGTGCTGAAGCAGGAACCGCTCGCATCACCGACCGAATCGTCTGCCAACGCCCTGCCAACGTACTACTCCTCCAACATGGCGCTCTACCAtgcccaccagcagcagcaacagcagcaccagcaaatgGTCGACAGCGGTAAGGATCTGGCCGACATTCAGTCGATCATCAATGTCGCGTCATCCGGAGGCCTGTTCGGTCGGCAGCTCGACGGTGGCAGCCATACGCCACTGTCCGGTTTGCTGGACGCTTCACTCGGTAAGGATGGTGCCGGCAGCGACAATGGCATGTACGCCCACTCGACCGGTTCGCGCGATGAGCCGGAAGAGGCGCAGGACGCATTCACCGCCGAGTTTCGCCGCATGAAGCTACGGGGCCAGTTCCCGTGCCGCATCTGTACCGCGGTGTTTCCGAACCTGCGCGCCCTCAAGGGTCACAACCGTACGCACGTGACGGCCGCCGGCCCCGGCCCGTACCAGTGCAACATGTGCCGTTACGTGGTCAGCGACAAGGCGACCCTGATCCGGCATATGCGCACGCACAACGGGGACCGCCCGTACGAGTGTGCACTGTGCAACTACGCCTTCACGACGAAGGCGAACTGTGAGCGGCATCTACGCAACCGGCACGGACGTACCACGCGCGAAGAGGTGAAGCGCGCCATCATCTACCATCCGGCCGAGGACTCGTCCTGTGACGATCCGCTGAAAAAGTTGCAGCTGTTCAACACACCACCGGCCGACGGGTCCTACACACCGACGATGCTGGCGAGTGCTAGCTATCAGGATGAGCAAAGCCTTCCCGAGGTACGCAGCAGTACGCCGCTGCAATCGCAAGAGCTCAAGGACATGCTGATGCCACCCTTGCCGCTGAGCTAcgtggcagcggcagcagcagcagccggtgcCACCAACCACAACCCACTGCTTGACACAAGTCTCCTCCTGCAAACGCCACTCGGAGGCGGAGGTGTTGGTAATGGTGCGTTCGGAAGTGCCGTAGCGGCGGCCAAGATACAGGTGAAGAGTTTGGAAAAGCTGAACCAACTCACCCCACCGAAGGAGGATGACGAGGCGCTCGATGAGGAGAACGAGCCCGAGGAACAACCGCCAATAGTCGCGGGCAAGAAACAAACACTAGACGGTGCGCAGCAGAAGCTGTCTAGCAAACACTCGGCAGGTGCGGAGTCCACCAACGCCACCAATCCGCTACCGATCGATCTTAGCATGGATGCGCTAGATCTTAGCAAAAAATCGACCGTGTTTAGTCGCAAACCAGCGGCTCCATCCACCCCAACAGCAGCCGCGTTACTTTCGACCGACGGTGAGGAGGACGACGATGACATCATGGAAGGTGTCGCACCGATGCACCGTCATCATCGAGCTGATATGCTGCTAGCCGTAAATGGTGCCGACAGCGAACCACGCTCAATGGTGGCGAAGAAGCATGCTGCTGGTAGCAGTGTtgccaaacagcagcagcagcacattccCCATCCTTCTCCCGCGAAGGAGGCAGACGTGGATGAGGATGAGGCGCCAAATCGTCGGGCAGAGATGCCGAAGCTTTCGAAAGTGAACCTggcccagcaacagcaacagttccAACTGTTCAACGATACCCTAGCCAAACTCGATCCGATGAACTTCTTCCAGCTGTACCAGCTGTACAACTCCCTGCAGCTGCCATCGTTCTCGCCCCTGCACGCCAGTCCGTTCTTGCAAAACCCCATGCTGACCGGTTCGGCGGCCGCCCTCGGTGAGCTGCTGGGTAAGGACTTTGGGTTGGGAGCGGCACTGCCGAATctggcagcggcagcggccgtaAGTGCGGCTGCATCGTCAGGCAGTGGCCGAAACCATCGTCATCCACTGCTGGTGAACCCGTTCTATCCACCGCCGGCCACTGATACACCACCGAACAGCGTTACCAAGTCGGGCGATTGTCTGGCGGGAGATGTTGGAACAGCAGCGACCGTTGCCACACCGAAGCAGCTGCTAACGCCCTCCTCACCTTCACCGATGTCAACACCGACCGGTGGAGCGAGCGGTGCTGGAGGTTCCAGTGGTGGGAGTAGCAATCAACTGTCCGCCTCCCTGCACCAGCATCATCCGGCCAGTGGGGGAAGCGGTGGTTCAGCTGCAGCATTAGCTgccgcggcagcagcagcagcagcagcggctgcCGGTTTCGGTGTGTCACCACTGTCgacggccggtggtggtggcggcagtTCGGCCGGTGTTGGTCCGGTCAAGATGGTGATCAAAAATGGAGTCCTGATGCCAAAGCAGAAGCAACGTCGCTACCGTACGGAACGTCCATTCGCTTGTGAGCATTGCTCCGCTCGATTCACGCTCCGCTCCAACATGGAGCGACACattaagcagcagcatccacaGTTCTGGTCTCAGCGGCAACGCGGTGGACATCATTTGATGCgtcgcggtggtggtggagctaacagcagcaccagcagcagtgttGCAAATGCTGCCTCCAGCAACAGCTCAGTTGGGTCGCTGGTTAGTGCACTGCAGGGTGCGTTCGGTGGTGGTAGCGGGGGCAATGGAAGTAGCGCCATTTCCGACCAGGTAAAGTACGCCATCTTGGCACAGCAATCTGGTAAGGGTGgtggcggtccggatggggcGGCTAGTCACATGAATCCTCTGCTGCACAACATGATCGTGCAGGGTGCGGCTGGACAGTggaatcagcagcagcaacaacaacaccaccagcgTCTCAACCACCATTACGGGCAGCAACAAGCTTCCATGATGTCGTCAGGACTTACCGGTGGACGGCGTATGGGTATGCGTGGTGAGACGGAGGAAgacgaggaggacgatgaCTGCCGGACCGAGGACAGACAGTACGAAGGTGCCACACCGGTACTGAGCCAGCGTTATCGGCGCCGTCGCCGTCGTTTGCAGTCCCACCTCGAGCAGGATGGTGAGTTTCTGCGCCGCGGTTTCGACGAAGCTAGTCTCCAAAAGATGGCGTTCGACGTGGAAGAACATCAGCGTCAGCTCACATCATCGGCCgaacacaaccaccaccaacgggaTGAAGAgaatgaggaggaggaggaggaagaggaggaggaggatgaagGAACTCAGGATGAGGGGCACGAGAAGGATGAAGATGAAGAGGACGATGCGCAGCTCGTGATTGACGAGGAGGAGGCGGACGAGGAGCAGGAAGAGAGTGGAGCAAAGGTAGTGAAGATGGAAGGACCGGCATCTAAGCATGCAGCGAAAAGCAGGTTGATCGAACCGAAGGACGAACACGGAGTGAATGCCAGTGTTAAGGAGTCGTATCCCGAGCCCAACGCTGGAAGCTTAAACCGCATTCTGAAACAGAAGCTGGAAGAGAATCGTTCAAAGGTGGACATAAGTGTGGAGAAGGTTGCAGCTGCTGTGCAGGAACCGCCAACGATGAATAATTCCACAGCTCCTCCATCCTCATGTAAGCAACCGAAGCAACACAACCCACCAGCAACCGTTTCGCGAAAGGCGTCATCTGGTAGCGGTAGCAGTAACAGCAGTAGTCTGATCAATCACGACGAAAGTGGTAGCAATAGCGATCTCGTACCAGTGTCAAAGCTGCTTGATAATGCAGCCAATCCGCAGGCATTGGAGAGCTACTTCAGCCGGCCAGATGTGCAGGTGCCACTATCGCAGGATCACAGCGACGAGGAGGGTCTGGTAGCGTCCGGTTCCGCTTCCGAGAGCAACAACTCCGGCACGGATGATCCGAACCCGTCGGCAGTGGCACTggcccaccagcagcagaagaagaagtccgCGTACAGTTTGGCCCCGAACCGGGTCAGCTGCCCGTACTGCCAGCGTATGTTCCCGTGGTCCAGCTCGTTGCGCCGTCACATCCTCACGCACACCGGCCAGAAACCGTTCAAGTGTTCGCAGTGCACGCTGCTCTTCACCACCAAGTCGAACTGCGATCGGCATCTGCTGCGCAAGCATGGCGACGTAGAGTCGGCCGTCTCCATACCGGTACCGATCGACGATCTGCTCGATCCGAAGCCGGAACCGATACCGGTTGCGGTTGCTGAAGCGATGTGCAAGAAGATTTCGGGCAAGGGCACACGTTCGTCGGTTGCCGCACTAAAGGGACCTGAGTTGCCACAACAGcttccacagcagcagcagcagcagcagcagcagcagcagcaaacgcagGTTAGCGCTGAAGAGGAGGAAGACCAGCCGGACGTTACTACGGAAGTGGCAAAAAACGATTCCTTTGACGCAACGTTGGTCGGAAAACGCCGAGAGTCTGGTGAGGAGGCATGCAGGCAGAAACCAACGTTCGAACAGGAAAAGAATGGCACTGACGAGGGTGGTCTGGAAGGGGAGGAGGACGGTGAGATGGAACCGGAGGAACAGGAAGCGAAGGAGACTCGTCCTCGGCGGGCAACCCGTCGCCAGCAGCTTCGTGAGCACGAGTCGGTGGAAAATGGCGATGAGGAGGAGGCGGAACGTCACCAGCAGGAACCGGCCGCCCAGGACACTGGACTGGAGgaagatgacgacgatgacggcGAAGGCAAGGAAGGGTTGTACTCTGCCGGTGGTTTGTCGGACCTCCCGTACAAGTGTCACCTGTGCGATGTTTCCACTGCCGAGCGGGTGTCCTGTCTCGAGCACATCAAGCAGACCCATCCGCAGGAGTTCACCACGCTTATGGCGAAGGTGTCGCTAGAGGCGGCGGCCTCGGCAACCGAGAGTGAAGCTCACACCGGTTCCCCGGACGACGACGAGAGtggcaccaacaacaacaacaacaacaataacaacaacaacaacaacggtggCAAGTATCTCGACTATGCCAATCGGAAGGTTATCTGCGCATTCTGTGTGCGTCGCTTCTGGTCGACGGAAGACCTGAGACGGCACATGCGGACGCACTCCGGCGAACGTCCGTTCCAGTGTGACGTTTGCGAACGCCGGTTCACCCTCAAGCACAGTATGCTGCGCCACCGGAAGAAACACTCAGCGGAGTGCGCCGAAGGCGGCAACACATCGCCCGCCTCGTCCGCTTCGTCCACCGGCCGGCGGCATACGGTGCAACGTCGCAGCAACGGTCAGTCCGAAGGTAGGCAAGGTAAGACCCACAACAACGGACACGCGCACCATCCCCACAGCGGGTCCGATCTTACCGATGACGACGAGTATGAGGACGCGGAGTGCTCCAGCCCACCGTTACCAACCAGCCGGCACCAAAGTTCCCCCCCCGCCGCCACCGAAACTGCGGAGATCCCAGCGGTGCCGTCGGCCATCGTCGGTGAAGGCAAGCGCTATCACCATCTCTTCCAGCAccacagccagcagcagcagcagcagcactcggAGTTGATCGGTAATCTGCTCGGCATCAGTGACCAGGGCATCCTGAGCCGGGTACTGCTGTCGTCCGCTTCCGAAGCTGCCAAGCTGCTCGGTGTGGACAAGTGA
Protein Sequence
MEAGSTSVGVANKNVATTPSTDTGSDGTVDGYMRAAIKVETPDATETPPNHPDHTTADRAEEEEAEAEEEEEEAVQSPPAPDTLLEVGKSASGEEDGDSTAASAKHNHFDRQQRRSSSSSGSNQSHHQQSANRQRSDHLHQLTDDMLRRKTMNNNNSNTVPNNNNSSSTRGGKRSLESTAEMLLQQQRRQAAVVPATATTSSGNKRRGSAGPPQRRTEDEEVEEEATASPAEPGKRYVCPICDCVSPTQRAFTDHIRLHNAESESAATAVASASFCCKICSKVLSSASSLDRHVLVHTGERPFNCKYCSLTFTTNGNMHRHMRTHKYPSGRDSFESDAGGGGSAGGVGAGGGSSSDGSGGGGGNKTGRNSGRSGAGGSTAASRHYRKKKEEEDPEEEEEDADEEDDYRQPKRKKKRALFTSGAGGEQQGGEEHTSTRRRKQHDLLMLDAGIEHQHVQEEEADEEDGEFDEEEELLGGGKRKVTLGGAGDRSHQYRKVRTINNNLLEGSVVESGQRYCCPVCVRNDFASMLALEQHLDREHPNIPAKCRHCEIMFRSHKALNAHRCSNNNYQNITPGFKDLTFVDFSSEKFPLIAKNLCEQSIRTPVTSQKYECARCYRAFPCSKTLSMHSADCCSSGGGGAASGERSAGQRRKRAPSESDSSDVSGSDMGSYYEDRRTFDDEQHGDQRHHQQQQQHVQQQQQQQQGHLRREDFFANLDLQNRSVGTFSEAPTTPSSLDKSFSSPVPVLKQEPLASPTESSANALPTYYSSNMALYHAHQQQQQQHQQMVDSGKDLADIQSIINVASSGGLFGRQLDGGSHTPLSGLLDASLGKDGAGSDNGMYAHSTGSRDEPEEAQDAFTAEFRRMKLRGQFPCRICTAVFPNLRALKGHNRTHVTAAGPGPYQCNMCRYVVSDKATLIRHMRTHNGDRPYECALCNYAFTTKANCERHLRNRHGRTTREEVKRAIIYHPAEDSSCDDPLKKLQLFNTPPADGSYTPTMLASASYQDEQSLPEVRSSTPLQSQELKDMLMPPLPLSYVAAAAAAAGATNHNPLLDTSLLLQTPLGGGGVGNGAFGSAVAAAKIQVKSLEKLNQLTPPKEDDEALDEENEPEEQPPIVAGKKQTLDGAQQKLSSKHSAGAESTNATNPLPIDLSMDALDLSKKSTVFSRKPAAPSTPTAAALLSTDGEEDDDDIMEGVAPMHRHHRADMLLAVNGADSEPRSMVAKKHAAGSSVAKQQQQHIPHPSPAKEADVDEDEAPNRRAEMPKLSKVNLAQQQQQFQLFNDTLAKLDPMNFFQLYQLYNSLQLPSFSPLHASPFLQNPMLTGSAAALGELLGKDFGLGAALPNLAAAAAVSAAASSGSGRNHRHPLLVNPFYPPPATDTPPNSVTKSGDCLAGDVGTAATVATPKQLLTPSSPSPMSTPTGGASGAGGSSGGSSNQLSASLHQHHPASGGSGGSAAALAAAAAAAAAAAAGFGVSPLSTAGGGGGSSAGVGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHIKQQHPQFWSQRQRGGHHLMRRGGGGANSSTSSSVANAASSNSSVGSLVSALQGAFGGGSGGNGSSAISDQVKYAILAQQSGKGGGGPDGAASHMNPLLHNMIVQGAAGQWNQQQQQQHHQRLNHHYGQQQASMMSSGLTGGRRMGMRGETEEDEEDDDCRTEDRQYEGATPVLSQRYRRRRRRLQSHLEQDGEFLRRGFDEASLQKMAFDVEEHQRQLTSSAEHNHHQRDEENEEEEEEEEEEDEGTQDEGHEKDEDEEDDAQLVIDEEEADEEQEESGAKVVKMEGPASKHAAKSRLIEPKDEHGVNASVKESYPEPNAGSLNRILKQKLEENRSKVDISVEKVAAAVQEPPTMNNSTAPPSSCKQPKQHNPPATVSRKASSGSGSSNSSSLINHDESGSNSDLVPVSKLLDNAANPQALESYFSRPDVQVPLSQDHSDEEGLVASGSASESNNSGTDDPNPSAVALAHQQQKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSQCTLLFTTKSNCDRHLLRKHGDVESAVSIPVPIDDLLDPKPEPIPVAVAEAMCKKISGKGTRSSVAALKGPELPQQLPQQQQQQQQQQQQTQVSAEEEEDQPDVTTEVAKNDSFDATLVGKRRESGEEACRQKPTFEQEKNGTDEGGLEGEEDGEMEPEEQEAKETRPRRATRRQQLREHESVENGDEEEAERHQQEPAAQDTGLEEDDDDDGEGKEGLYSAGGLSDLPYKCHLCDVSTAERVSCLEHIKQTHPQEFTTLMAKVSLEAAASATESEAHTGSPDDDESGTNNNNNNNNNNNNNGGKYLDYANRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCDVCERRFTLKHSMLRHRKKHSAECAEGGNTSPASSASSTGRRHTVQRRSNGQSEGRQGKTHNNGHAHHPHSGSDLTDDDEYEDAECSSPPLPTSRHQSSPPAATETAEIPAVPSAIVGEGKRYHHLFQHHSQQQQQQHSELIGNLLGISDQGILSRVLLSSASEAAKLLGVDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00103906;
90% Identity
-
80% Identity
-