Basic Information

Gene Symbol
Rreb1
Assembly
GCA_943734865.1
Location
CALSEK010000208.1:501-8470[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.001 0.054 13.8 0.3 1 23 238 260 238 260 0.98
2 13 0.00056 0.03 14.6 0.9 1 23 276 298 276 298 0.97
3 13 2e-05 0.0011 19.2 5.2 1 23 304 326 304 326 0.98
4 13 0.19 10 6.6 4.4 2 21 544 563 544 564 0.94
5 13 0.007 0.37 11.2 0.1 1 23 865 887 865 887 0.98
6 13 4.6e-06 0.00024 21.2 0.6 1 23 896 918 896 918 0.99
7 13 0.0025 0.13 12.6 2.3 1 23 924 947 924 947 0.97
8 13 0.0015 0.078 13.3 2.1 1 23 1517 1540 1517 1540 0.95
9 13 0.00013 0.0071 16.6 0.3 2 23 2021 2042 2020 2042 0.97
10 13 0.68 36 4.9 5.4 1 23 2048 2071 2048 2071 0.96
11 13 1 56 4.3 1.7 1 23 2273 2296 2273 2296 0.93
12 13 0.018 0.99 9.8 0.6 3 23 2359 2379 2357 2379 0.95
13 13 0.0011 0.058 13.7 5.1 1 23 2385 2407 2385 2407 0.99

Sequence Information

Coding Sequence
ATGGACGCCGGAAGTAATAGTGTCGGAGTTGCCAATAATGCTGCTACAGCACCGTCGTCCGCTGGCACTGGCAGCGACGAGACATCTGATGGGTATATGCGGGCAGCAGCGATAAAAGTCGAGACGCCCGATGCAACAGAATCGTCTCCAAGTCAAGCAGAGCACACAGCCGAAGGTGACCGGGAAGTGAACGTGGAGGCTGCAGAAGAGATGGAGGAGGAAGAAGCGATACCGTCACCACCGGCAGCAGACACGATGCTggaggtcggtaagagtgtttcgggggaggaggataacggtggctgcaacactgctgcgatgcaatcggcaaaccacaaccatcgtcagcaacggcgtagcagcagcagcagcggcagcaaccaaagccatcatcagcagtcggccaacagacagcggagcgagcatctgcaccaactaacggacgacatgctgcggcggaaaacgatgaacaacaacaacagcaacacggtgcccaacaacaacagcagcggcacacgtggcgggaaacgatcgctagaatcgacggcagaaatgctactacagcagcagcgtcgccaagcggcggcaacggccgccacatcctccaccaacaagcgacgGGGATCATCCGGTCCACCACAGCGCCGGACGGAGGACGAGGAGGAGGAGGAGGTGCATCCAGCGTCGGCTGGTACGGAGACCTGTAAGCGATACATCTGCCCGATCTGTGACTGCGTATCACCGACCCAGCGTGCCTTCACCGATCACATCCGGCTGCACAATGCCGAGTCTGAGTCGGCGGCGACGGCCGTGGCGTCGGCCAGCTTCTGCTGCAAAATCTGCTCCAAGGTGCTGTCGTCCGCGTCGTCTCTCGATCGACACGTGCTGGTACATACGGGTGAGCGGCCGTTCAACTGCAAGTACTGCAGCCTCACGTTCACCACCAACGGGAATATGCATCGGCACATGCGCACCCACAAGTATCCGTCCGGCCGGGACAGCTTTGAGAGCGATGCCGGTGGCGGTGGAGGTACCGGCGGCATCGGTGGCTCATCGTCCGATGGTAGCGGGGCTGGTGGAAACAAGACTGTCCGCAATAGTAGTGGGCGATCCGGAGTTCACGGTGGTGCGGCAACAACAGCGAATCGTCACTATCGCAAGAAGAAGGAAGAGGACCCGGAAGAGGAGGAAGAAGACGCCGATGAGGAGGATGATTATCGGCAGCCAAAGAGGAAGAAGAAGCGTGCTCTCTTTACTAGCGGTGGTGGGGAGCAGGAGGAGGACGAGCTGGCGAGCAGCACAAGGCGCCGGAAGCAACATGATCTGATGCTGCTGGACACTGAGATGGAGCAGCAACATGCGCAGGCAGAAGCAGATGAGGAAGATTGCGATTTTGAGGAGGAAGAGGAGCTGCTCGGTGTTGGTGGCAAGCGCAAGGTAACGTTGGGTGGTGGAGGCGAACGAGCACAACAGTATCGGAAGGTGCGCACCATCAACAATAATCTGCTCGAAGGTTCGGTGGTTGAAAGTGGGCAACGGTACTGCTGTCCGGTGTGCGTGCGGAACGATTTTGCCAGCATGCTCAGCCTGGAACAGCATCTCGACCGGGAACATCCGAACATACCGGCCAAGTGCCGCCACTGCGAGATAATGTTCCGCAGCCACAAGGCGCTAAATGCGCACCGTTGCAGCAACAACAACTATCAAAACATAACGCCCGGCTTCAAGGATCTCACTTTTGTCGATTTTTCCAGCGAGAAGTTTCCGCTGATCGCGAAGAATCTGTGCGAACAGAGCATCCGGACGCCGGTTACGAGCCAAAAGTACGAGTGTGCCCGGTGCTATCGGGCGTTCCCGTGCTCGAAAACGCTCTCGATGCATTCGGCTGACTGTTGCAGTGGTGGTGGAGCTAGTGGCGAACGCCCGGCTGGCCAGAGACGCAAGCGTGCGCCGAGCGAGTCGGACTCGTCGGATGTGTCCGGTTCGGACATTGGTTCATACTACGAGGATCGCCGGACGTACAAtgacgagcagcacggtgaccagcgtcaccagcagcatcaacagcagcaacagcatgtacagcagcagggtcatctgcgcagGGAGGATTTCTTTGCCAACTTGGATCTCCAGAATCGTTCGGTGGGAACATTTTCGGAAGCACCAACGACGCCCTCCTCGCTGGACAAATCTTTCTCCTCGCCTGTACCGGTGCTGAAGCAGGAACCACTCGCATCACCGACTGAATCGTCTGCCAACGCCCTGCCAACGTACTACTCCTCCAACATGGCGCTCTACCATGCCCACCAGCAGCAACAGCAGCAGCATCAGCAAATGGTCGACAGCGGCAAGGATCTGGCCGACATACAGTCCATCATCAATGTGGCCTCCTCTGGAGGGCTCTTCGGTCGTCAGCTAGATGGTGATACCCACACACCACTGTCCGGTTTGCTGGACGCTTCCCTCGGTAAGGATGGTGCAGGCAGCGACAATGGGATGTACGCTCACTCCACCGGATCACGAGATGAACCCGAGGAAGCGCAGGACGCATTCACCGCCGAGTTTCGCCGCATGAAGCTCCGGGGCCAGTTCCCGTGCCGTATCTGCACCGCGGTGTTTCCTAACCTGCGCGCCCTCAAGGGCCACAACCGAACGCACGTGACGGCAGCAGGGCCAGGCCCGTACCAGTGCAACATGTGCCGTTACGTGGTCAGCGACAAAGCGACGCTGATCCGGCATATGCGCACCCACAACGGGGATCGCCCGTACGAGTGTGCGCTCTGCAACTATGCCTTCACGACGAAGGCGAACTGTGAACGGCATCTGCGCAACCGACACGGACGTACCACGCGCGAAGATGTGAAGCGCGCCATCATATACCATCCAGCGGAGGACTCGTCCTGTGACGATCCGCTGAAGAAGTTGCAACTGTTCAACACGCCACCGGCCGACGGTTCCTATACTCCGACGATGCTGGCTAGCGCTAGCTATCAGGATGATCAAAGCCTGCCGGAGGTACGCAGCAGTACGCCGCTACAATCCCAAGAGCTCAAGGATATGCTAATGCCACCCTTGCCGCTGAGCTATGTGGCGGCAGCAGCAGCGGCCGGTAGCACTAACCACAACCCATTGCTTGATACCAGCCTGCTCCTGCAGACGCCACTCGGCGGCGGAGGTGTTGTGGGCAATGGGGCGTTTGGTAGTGCGGTGGCGGCGGCCAAGATTCAGGTGAAAAGTTTGGAAAAGTTGAACCAACTGACACCTCCGAAAGAGGACGCCGATGCGCTCGATGAGGAAAATGAGCCGGAAGATCAGGTTGCAACAATCGCAGGCAAGAAGGCAACTTCGGAAGGTGGTGCAGCTCAGGCGCAAAAGACGAGCAGCAAACACTTGGCAGGCGGTGCAGAGCCGAACAACAGCAATCCGCTACCAATCGATCTGAGCATGGATGCATTGGATCTTAGTAAAAAATCGACCGTCTTTAGTCGTAAGCCAGCGGCGCCACGCACACCCACAGCTCCGATGCTCTCGACAGACGGTGAGGAGGAGGACGACGACGTGGAAGGTGTTGCATCGATGCTCCGCCATCATCGTGCTGAGATGTTGCTTCCCGTCAATGGTGTGGACGGTGAGCCACGGTCGATGGCGTCGAAGAAGCATGCTGCTGGTAGTGGTAGCAGCAGCGCTCCCAAACAGCAGCCGCACATTACGCCTTCACCCGCCAAGGAAGCTGACGTCGATGAGGACGAAGCGCTACACCGTGCACCGATACCGAAGCTTTCCAAGGTGAATTTGGCCCAGCAGCAGCAACAGTTCCAGCTGTTCAACGATACCCTAGCCAAACTCGATCCAATGAACTTCTTCCAGCTGTACCAGCTGTACAACTCGCTGCAGTTACCATCGTTCTCGCCACTGCACGCTAGTCCGTTTCTCCAAAACCCCATGCTAACCGGTTCTGCGGCCGCCCTTGGTGAGCTGTTGGGTAAGGACTTCGGGCTGGGAGCACTGCCAAATCTGGCAGCAGCGGCAGCCGTAACTGCGGCAGCAACGTCGGGTAGTGGTCGAAACCATCGCCACCCATTGCTGGTAAACCCGTTCTATCCACCGCCGGCCACCGACACACCGCCAAACAGCGTTTCCAAGTCGGGCGATTGTCTGTCCGGTGACATCGGAACGGCGGCGACCGTAGCAACGCCGAAGCAGCTGCTAACACCCTCCTCACCTTCGCCCATGTCGACACCGACTGGTGGTGTGAGtggaaccggaggttccagtggagccagcaacacgcaactgtcggcgtccttgcagcagcagcagcatccgggaagtggtggccctggcagtggttcaccagtcgcatcggcagctgcattagctgcggcagcggcagcagcagcggccgcCGGTTTCGGTGTTTCACCACTATCGACGGCGGGTGGTGGTGGCGGCAGTTCGTCCGGCGTCGGTCCGGTCAAAATGGTGATCAAAAATGGAGTCCTTATGCCAAAGCAGAAGCAGCGTCGTTACCGTACAGAGCGTCCATTCGCTTGTGAGCATTGTTCTGCTAGATTTACGCTTCGCTCCAACATGGAACGACACATTAAGCAGCAGCATCCACAGTTTTGGTCCCAGCGGCAACGGGGTGGCCACCATTTGATGCGTCGCGGTGGTGGTGGTGGCGGAGGAACGAGCAACAGCAGTAGTAGTGCGAACCTGAGCTCTACAAATAGTTCCGTTGGTTCGCTGGTTAGCGCACTGCAGGGTGCGTTCGGTGGTGGTAGTAGTGGCAATGGCGGTGGTGCCATTTCCGATCAGGTAAAGTACGCCATCTTGGCACAGCAATCGGGCAAAGGCAGCAGTGGGCAGGATGGTGCCGCCAGCCACTTGAACCCTTTGCTGCACAACATGATCGTGCAGGGTGCGGCAGGACAATGGAACCAGCAACAGCAACACCACCAGCGTCTCAACCATCATTACGGTCAACAGCAGCAACAGTCTCCCGTAATGCCATCCGGGCTTGGTGCGGGGCGGCGTATGGGTGGATTGATGCGGGGCGAGACTGAGGAGGACGAAGAGGATGACGACTACCGGACGGAAGACAGACCGTACGAAGGTGCCACACCGATACTGAGCCAACGTTATCGGCGCCGCCGCCGTCGTTTGCAGTCCCATCTCGAACATGACGGTGAGCTTCTGCGCCGTGGGTATGACGAAGCTAGCCTCCAAAGGATGGCGATGGACGAGGAGGAACATCTCCGCCAGCTAACAACATCCTCAGAGCACAACCAACGGACCGTAGAGCATGAAGACGAGGAGGAGGACGAGGAGGGAACTCAGGACGAAGGGCATGCGAAAGGAGAGGATGAAGAAGAAGAGGACGATGCACAGCTCGTTATCGACGAGGAGGAAGACGAAGAGGAGGAAGAGAGTGGAGGGAAAATGGAAGTACAGACATCTAAGCATACGACCAAGAATGTCGCAGTCTTCGCCGAACCCAAGGACGATCAAAGAGCAAATGCTAAGGATACGCATCCCGAGCACAACGCTGGTAGCTTGAACCGCATACTGAAACAGAAGCTGGAAGAGAATCGTTCAAAGTTGGAGATTGTTAGTGGCGTTGGGGAAAAGGTGCCAGCAGCTCAGGAACTGCTAACGATGAACAATTCCACTGCTGTGCAGCAACAATCCACCTGTAAGCAGCCGAAGCAACATAACCCACCAGCAACCGTCACACGCAAGGCGTCCTCTGGTAGCGGTAGTAGCCACATCAGTCTGAACAATCACGACGAAAGCGGTAGCAACAGTGATCTCGTACCAGTGTCAAAGCTGCTTGATAACGCAGCCAATCCGCAAGCATTGGAAAGCTACTTTAGCCGACCAGATGTACAGGTACCGTTGTCTCAGGATCACAGCGACGAGGAGGGTCTGGTAGCGTCCGGTTCGGCTTCCGAGAGCAACAACTCCGGCACGGATGATCCGAACCCTTCGGCCGTGGCACTCGCCCATCAGCAGCAGAAAAAGAAGTCCGCGTATAGTTTGGCCCCGAACCGTGTTAGCTGTCCGTACTGCCAGCGCATGTTCCCGTGGTCGAGCTCGTTGCGCCGTCACATCCTCACGCACACCGGTCAGAAACCGTTCAAGTGTTCGCAGTGCACGCTGCTCTTCACCACCAAGTCTAACTGTGATCGGCATCTGCTGCGCAAGCATGGTGATGTAGAGTCGGCCGTATCCATACCGGTACCGATCGACGATCTGCTGGATCCGAAACCGGAACCGATACCGGTGGCGGTCGCTGAAGCGATGTGCAAGAAGATTTCGGGCAAGGGTACACGGTCGTCTGTTGCCACGCTAAAGGGACCTGAACAGCTGCCACAGCAACAGCAGCAACCGCAACAACAACAGGTGGGCGCTGAAGAGGAGGACGACCATTCCACCACACAGGTTGCTAAGGAAGTGTCAAAAAACGAATCATTTGACGGCACAACGGTGGGCAATCGTAGCGCGTCCGGTGACGAGGAGGAGTGCAAGCTGAATCCAGTGTTTGAAAAGAAGAAGAATGGTAATGATGTGGGTGGTCCAGATGACGAGGAGGGTGAAGTAGAGGAGGAGGAGGAGGAGGAAACGAAGGAGACTCGTTATCGGCGATCCTCTCGTCGCCAGCATCTACGTGAGCATGGATTGGCGGAGAACGGCGAGGACGAGGAACGCCGGCATCAGGAAGCGGCGGCCCAAGACACTGCTCAGGAGGAAGACGACGATGGGGAGGGCAAGGAAGGATTGTTTTCTGCCGGTGGTTTGTCGGATCTTCCGTACAAGTGTCACCTGTGCGATGTTTCAACTGCCGACCGTGTGTCCTGTCTGGAGCACATCAAGCAGGCACACCAGCAGGAGTTCACAACACTTATGGCGAAGGTGTCGCTCGAGGCTGCAGCATCGGCGACCGAGAGTGAAGCTCATACGGGCTCGCCGGACGATGAAGAGagtggcaccaacaacaataacaacaacaacaataataacaacaacaacggtggcaAGTATCTCGACTATGCCAATCGGAAGgttatctgcgcattctgtttgCGTCGCTTCTGGTCGACGGAAGACCTGAGACGGCACATGCGGACGCACTCCGGTGAGCGACCGTTCCAGTGTGACGTTTGCGATCGCCGATTCACCCTCAAGCACAGTATGCTGCGCCACCGGAAGAAACATACCACGGACGGTGGCGAAGGTAACACTTCGCCCGCCTCGTCCTCTTCTTCCACCGGGCGCCGGCACACGATGCGTCGTAACGTCACCAACGGTCAGTCAGATGGAAGAAAAGGTAAGAGCTTCAACAACAATGGACACGCTGATGGTGACCACCACAGCGGGTCCGATCTTACCGATGACGATGAGTATGAGGACGCGGAGTGCTCCAGCCCACCATTACAACACCACCAAAGTTCAGCCGATGGTGAATCCGCAGCCACCAACACCACTGCGGAGATCCCAGCGGTGTCATCAGCGACGGCCATCGTCGGCGAAAGGAAGCGCTATCACCATCTCTTCCAGCAACAACAGCACTCGGAGCTGATCGGTAATCTGCTCGGCATCAGCGACCAGGGTATCCTGAGCCGGGTCCTACTATCGTCCGCATCCGAAGCGGCCAAGCTGCTCGGCGTGGACAAGTGA
Protein Sequence
MDAGSNSVGVANNAATAPSSAGTGSDETSDGYMRAAAIKVETPDATESSPSQAEHTAEGDREVNVEAAEEMEEEEAIPSPPAADTMLEVGKSVSGEEDNGGCNTAAMQSANHNHRQQRRSSSSSGSNQSHHQQSANRQRSEHLHQLTDDMLRRKTMNNNNSNTVPNNNSSGTRGGKRSLESTAEMLLQQQRRQAAATAATSSTNKRRGSSGPPQRRTEDEEEEEVHPASAGTETCKRYICPICDCVSPTQRAFTDHIRLHNAESESAATAVASASFCCKICSKVLSSASSLDRHVLVHTGERPFNCKYCSLTFTTNGNMHRHMRTHKYPSGRDSFESDAGGGGGTGGIGGSSSDGSGAGGNKTVRNSSGRSGVHGGAATTANRHYRKKKEEDPEEEEEDADEEDDYRQPKRKKKRALFTSGGGEQEEDELASSTRRRKQHDLMLLDTEMEQQHAQAEADEEDCDFEEEEELLGVGGKRKVTLGGGGERAQQYRKVRTINNNLLEGSVVESGQRYCCPVCVRNDFASMLSLEQHLDREHPNIPAKCRHCEIMFRSHKALNAHRCSNNNYQNITPGFKDLTFVDFSSEKFPLIAKNLCEQSIRTPVTSQKYECARCYRAFPCSKTLSMHSADCCSGGGASGERPAGQRRKRAPSESDSSDVSGSDIGSYYEDRRTYNDEQHGDQRHQQHQQQQQHVQQQGHLRREDFFANLDLQNRSVGTFSEAPTTPSSLDKSFSSPVPVLKQEPLASPTESSANALPTYYSSNMALYHAHQQQQQQHQQMVDSGKDLADIQSIINVASSGGLFGRQLDGDTHTPLSGLLDASLGKDGAGSDNGMYAHSTGSRDEPEEAQDAFTAEFRRMKLRGQFPCRICTAVFPNLRALKGHNRTHVTAAGPGPYQCNMCRYVVSDKATLIRHMRTHNGDRPYECALCNYAFTTKANCERHLRNRHGRTTREDVKRAIIYHPAEDSSCDDPLKKLQLFNTPPADGSYTPTMLASASYQDDQSLPEVRSSTPLQSQELKDMLMPPLPLSYVAAAAAAGSTNHNPLLDTSLLLQTPLGGGGVVGNGAFGSAVAAAKIQVKSLEKLNQLTPPKEDADALDEENEPEDQVATIAGKKATSEGGAAQAQKTSSKHLAGGAEPNNSNPLPIDLSMDALDLSKKSTVFSRKPAAPRTPTAPMLSTDGEEEDDDVEGVASMLRHHRAEMLLPVNGVDGEPRSMASKKHAAGSGSSSAPKQQPHITPSPAKEADVDEDEALHRAPIPKLSKVNLAQQQQQFQLFNDTLAKLDPMNFFQLYQLYNSLQLPSFSPLHASPFLQNPMLTGSAAALGELLGKDFGLGALPNLAAAAAVTAAATSGSGRNHRHPLLVNPFYPPPATDTPPNSVSKSGDCLSGDIGTAATVATPKQLLTPSSPSPMSTPTGGVSGTGGSSGASNTQLSASLQQQQHPGSGGPGSGSPVASAAALAAAAAAAAAAGFGVSPLSTAGGGGGSSSGVGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHIKQQHPQFWSQRQRGGHHLMRRGGGGGGGTSNSSSSANLSSTNSSVGSLVSALQGAFGGGSSGNGGGAISDQVKYAILAQQSGKGSSGQDGAASHLNPLLHNMIVQGAAGQWNQQQQHHQRLNHHYGQQQQQSPVMPSGLGAGRRMGGLMRGETEEDEEDDDYRTEDRPYEGATPILSQRYRRRRRRLQSHLEHDGELLRRGYDEASLQRMAMDEEEHLRQLTTSSEHNQRTVEHEDEEEDEEGTQDEGHAKGEDEEEEDDAQLVIDEEEDEEEEESGGKMEVQTSKHTTKNVAVFAEPKDDQRANAKDTHPEHNAGSLNRILKQKLEENRSKLEIVSGVGEKVPAAQELLTMNNSTAVQQQSTCKQPKQHNPPATVTRKASSGSGSSHISLNNHDESGSNSDLVPVSKLLDNAANPQALESYFSRPDVQVPLSQDHSDEEGLVASGSASESNNSGTDDPNPSAVALAHQQQKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSQCTLLFTTKSNCDRHLLRKHGDVESAVSIPVPIDDLLDPKPEPIPVAVAEAMCKKISGKGTRSSVATLKGPEQLPQQQQQPQQQQVGAEEEDDHSTTQVAKEVSKNESFDGTTVGNRSASGDEEECKLNPVFEKKKNGNDVGGPDDEEGEVEEEEEEETKETRYRRSSRRQHLREHGLAENGEDEERRHQEAAAQDTAQEEDDDGEGKEGLFSAGGLSDLPYKCHLCDVSTADRVSCLEHIKQAHQQEFTTLMAKVSLEAAASATESEAHTGSPDDEESGTNNNNNNNNNNNNNGGKYLDYANRKVICAFCLRRFWSTEDLRRHMRTHSGERPFQCDVCDRRFTLKHSMLRHRKKHTTDGGEGNTSPASSSSSTGRRHTMRRNVTNGQSDGRKGKSFNNNGHADGDHHSGSDLTDDDEYEDAECSSPPLQHHQSSADGESAATNTTAEIPAVSSATAIVGERKRYHHLFQQQQHSELIGNLLGISDQGILSRVLLSSASEAAKLLGVDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00108657;
90% Identity
-
80% Identity
-