Aste010456.1
Basic Information
- Insect
- Anopheles stephensi
- Gene Symbol
- -
- Assembly
- GCA_013141755.1
- Location
- CM023248.1:21774639-21783150[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00068 0.039 14.2 4.0 1 23 203 225 203 225 0.97 2 11 0.0079 0.46 10.8 9.0 1 23 231 253 231 253 0.96 3 11 0.00013 0.0075 16.5 6.5 1 23 259 281 259 281 0.98 4 11 0.00059 0.034 14.4 2.4 1 23 287 309 287 309 0.95 5 11 0.00023 0.013 15.7 0.3 1 23 315 337 315 337 0.97 6 11 0.00014 0.008 16.4 1.3 1 23 343 365 343 365 0.97 7 11 6.6e-05 0.0038 17.4 1.3 1 23 370 392 370 392 0.97 8 11 0.0025 0.14 12.4 0.6 6 23 403 421 398 421 0.89 9 11 0.00037 0.022 15.0 0.1 1 23 508 530 508 530 0.97 10 11 0.0032 0.19 12.1 5.1 1 23 681 703 681 703 0.97 11 11 0.0057 0.33 11.3 4.9 5 23 716 734 708 734 0.92
Sequence Information
- Coding Sequence
- ATGCCATACTTGCAGCTTCCGGACGGGGCTAGCATTTTGCTGAAGGATGGAAAGGGTGCGATCTCGCACGCCGGCAGCAAAGGCGTCCGTCGCATGATCCTCGTCAACGATGCATCCGCGGCGCTGCCCCAAGGAACGCAACGGATAATTACTACCGGTGGTACTGCGACAGCCGTCACTACCGGCCATGCGAAGAAACACGAAGTTATAACAAATGGCCAGATTGACACGAAGACGAAGGCGATCCTCACGACGAGCGGGGCCAGTGCGTTCATGTCACCGATCGGACCGATACAGCTGACGGCAGAGGAGTGCAACGATATACTGATGAAGCGGGCGGCCGCTGCAGTTGCTGCCAACAATCAGCATGccatcaccaacaacaacgatGGCCAGCATACCTCGATTTCAGTTCAGGTGCAGAAAGTGATTCAAGGGCTGGAGGAGGGCGACGATTCACAGGCCACCACCTCCAACCACCAGATGAAGATTGAACCGACGCTAAGCATTTCGCCAAAGCTGGAAGCGGTAGAAATGGATTATAACGAGTACGTCCAGCAGGAAGCAACCACCCCGACACCGAACGTGGTCCCGAAGGAGCGTCCGTACTCGTGCGAACAGTGCGGAAAATCGTTCCTGCTGAAGCATCATCTGACCACCCATGCCAGGGTGCACACCGGTGAACGGCCGCACGTATGCGTCCACTGTGGCAAAGACTTTGCCCACAAGCACTGTCTGAACAcgcatctgctgctgcactcGACCGAGCGCCCGTACCAGTGTCAGGAGTGCAAGAAGAGCTTCACCCTGAAGCACCATCTGCTCACACACTCGCGGGTACACTCGCGCGAACGGCCGTTCGTGTGCGATCAGTGCGGTCGATCGTTCCCGCTGAAGCGCCATCTGGTGACGCACAGCAAGTTCCACGCGGGCGAGCGCCCGTACGTGTGTGCAGACTGTGGGGAAAGCTTTGCCCAGGACGAACATCTGGTAATGCACTCCCGGTTCCATGGTTCGGTGAATCCGTTCCACTGCCGCGATTGTGGTGCTACGTTCCCGCGCAAGTTCCAGCTGGTGAACCACGGCAAGATACACGGCCGTGTACCGCACTCGTGCACGCTCTGTGGCAAAGAGTTCCTGCAGAAGCGCACCCTAGCGGCACACATGAGAATCCATACCGGCGATCAGCCATTCCCTTGCATTGCTTGCGGCGAAGGGTTCCGCACGAAGTCGGAGCTGAACGCGCACAACCGTCACACGCACAGTGGTGTCAACCCGAACGCGtccaacaccaccatcatcacgacCAACTCGGTTGTGACGTCGAAcgctcagcagcaacaggcaCAGGCAcaggcacagcagcagcaacagcagcaccagcagcagcacatcgaGGTGAAACAGATCCAGCACTATCAgggtcaacagcagcaggtgcAGGATGTGTCGAACGGGAACATCATCACGACGATTGCTGCTACCGGTCAAGGGTCGCCCGAAACATCGGCAAAGCCACAGTACGCTTGCCGCGAGTGTGGCAGCGCGTTCAACAGTCGGGAAGCGTTGGCACTGCATTTGCGTCTGCATACCGGCGACAAGAGTCTCATGACCGATCTGTGCGCACTGACCGCGGCAATACCGGGCCACTTGTTCCCGGCCGTCAATCAAGAGCTGAAAGTAGAGTACCCGATGGTTGGCGGTGGCAACGCGGTGAACGGCGATACGATCATGGCGACAAACCCCGTAATACAGAACTCTTCCTTTCCAGTACAAATAATTACCTCCTCGGGTCAGGTggtgcagcagctgcaacCTCAAAGCCCTccccagcagcaccagcagcaactgcaacaacaGGCACAGGTGGTGCAACAACATCAGACCCAAACCGTggtacagcagcaacaaacccagcagcaacagcttcagcaccagcagcagcagcaacaacagcagcagcagcaacagcaacaacaacagcaacaccagcaacagcagcaacaaaccgTTGTCGTGGCACAGAACAAACCCAAATCCCACTACTGCACCCACTGCGGCAAGGGATTCGCGGCCAAGCACGGGCTAATGTTGCACAACCGTCGTCACCCGAACGGGGGCTGTACCGTACGGACGCACGTGTGCGAGTGCGGTAAGGCCTTCTTCCAGAAGAACCACCTGATGCTGCACCAGCGTCAGCATCTGGAGCAGAATCAACGCACCGGCGGTGGGGTCGCGGGTGGTGCGGGTGCCGCCGGTCAGGctggtcagcagcagcagcagcaagcgtccgccggtcagcagcagctggttGTGATTCAAGCCACCAACCAGGAATCGAtggtgcagcaacagcagcagcagcaacaggcaGCCGTTGCCgctcagcaacagcaagcggCGGCTGCAGCCGCTgcccagcaacagcatcagctgcaacaacagcaggcCCAGCAGCAAGCGGTAgcggtacagcagcagcaggctcaGCAGCAGGCACAACAGcaagcacagcagcagcagaaccagAACAATCAGCATGCGATGCGCAATCTGGTGATTGCGAACCAGCCCGTGCAGGTGCAGGTCCTGGAAGGTAACACGACCCAGGTAATCAAGTACGAGATCATTCACGACACGTCACGCCAGTCGAACGTTGAGTGA
- Protein Sequence
- MPYLQLPDGASILLKDGKGAISHAGSKGVRRMILVNDASAALPQGTQRIITTGGTATAVTTGHAKKHEVITNGQIDTKTKAILTTSGASAFMSPIGPIQLTAEECNDILMKRAAAAVAANNQHAITNNNDGQHTSISVQVQKVIQGLEEGDDSQATTSNHQMKIEPTLSISPKLEAVEMDYNEYVQQEATTPTPNVVPKERPYSCEQCGKSFLLKHHLTTHARVHTGERPHVCVHCGKDFAHKHCLNTHLLLHSTERPYQCQECKKSFTLKHHLLTHSRVHSRERPFVCDQCGRSFPLKRHLVTHSKFHAGERPYVCADCGESFAQDEHLVMHSRFHGSVNPFHCRDCGATFPRKFQLVNHGKIHGRVPHSCTLCGKEFLQKRTLAAHMRIHTGDQPFPCIACGEGFRTKSELNAHNRHTHSGVNPNASNTTIITTNSVVTSNAQQQQAQAQAQQQQQQHQQQHIEVKQIQHYQGQQQQVQDVSNGNIITTIAATGQGSPETSAKPQYACRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAAIPGHLFPAVNQELKVEYPMVGGGNAVNGDTIMATNPVIQNSSFPVQIITSSGQVVQQLQPQSPPQQHQQQLQQQAQVVQQHQTQTVVQQQQTQQQQLQHQQQQQQQQQQQQQQQQQHQQQQQQTVVVAQNKPKSHYCTHCGKGFAAKHGLMLHNRRHPNGGCTVRTHVCECGKAFFQKNHLMLHQRQHLEQNQRTGGGVAGGAGAAGQAGQQQQQQASAGQQQLVVIQATNQESMVQQQQQQQQAAVAAQQQQAAAAAAAQQQHQLQQQQAQQQAVAVQQQQAQQQAQQQAQQQQNQNNQHAMRNLVIANQPVQVQVLEGNTTQVIKYEIIHDTSRQSNVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00097245;
- 90% Identity
- iTF_00105322;
- 80% Identity
- -