Aqua001082.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Anopheles quadriannulatus
Gene Symbol
-
Assembly
GCA_000349065.1
Location
KB667176.1:1183479-1196650[-]

Transcription Factor Domain

TF Family
zf-GAGA
Domain
zf-GAGA domain
PFAM
PF09237
TF Group
Zinc-Coordinating Group
Description
Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 2 7.9e+03 -3.5 0.0 13 30 65 82 62 83 0.78
2 14 0.00077 3.1 7.4 0.1 21 43 101 123 93 132 0.86
3 14 0.0017 6.7 6.4 0.2 23 47 131 155 127 160 0.84
4 14 0.0047 19 4.9 0.1 23 47 159 183 156 188 0.85
5 14 0.0046 18 5.0 0.1 23 48 187 212 183 217 0.85
6 14 0.0032 13 5.5 0.0 23 49 215 241 211 246 0.85
7 14 0.36 1.4e+03 -1.1 0.0 24 48 244 268 241 273 0.80
8 14 0.011 44 3.8 0.0 23 49 271 297 267 302 0.85
9 14 0.32 1.3e+03 -0.9 0.0 23 48 299 324 294 330 0.83
10 14 0.38 1.5e+03 -1.2 0.0 23 48 327 352 324 357 0.80
11 14 0.054 2.2e+02 1.5 0.0 23 52 355 384 352 386 0.86
12 14 0.015 60 3.3 0.0 23 48 383 408 379 412 0.84
13 14 0.014 57 3.4 0.0 21 46 409 433 406 439 0.87
14 14 6.7e-05 0.27 10.8 0.1 23 44 439 460 436 466 0.91

Sequence Information

Coding Sequence
ATGTTCTACCCGCTGCAAACCCAATTCGATGATGGTGTGATAGAGCTAACACGGTCGGAAATGCTCCAGCAGGATCATCTGGTGGACAATAAGCATTTTGTCGTGTCGCTATCCCTGGGCAATACGCTTATCAATCTCAACAAAATCAAGTGTCCACAGTGCCGGAAGCGTTTCGATACGATGGAGGAAATGGAACAGCACCGGACGAAGCATTTGACGGAGAACAAGTTTAAGTGCGAAATATGCAGCAAAGAATTTCCCAGCCATAGTTCCATGTGGAAGCACACCAAGGCACACACGGGCGAACGTCCTTTCGTTTGTCAGATTTGTAACAAAGGCTTCACCCAGCTGGCCAACCTGCAACGACATGATCTCGTCCACAATGGACTAAAGCCGTTCAAGTGTCCCATCTGTGAAAAATGCTTTACCCAGCAAGCCAACATGTTGAAACATCAACTTCTGCATACCGGTCTTAAGCCGTACAAATGTCCGGTGTGCGAGAAAGCGTTCTCGCAACATGCAAACATGGTCAAACATCAAATGCTTCATACAGGATTAAAGCCGTACAAGTGTCCCGTTTGCGAAAAGGCATTTACGCAACACGCCAACATGATTAAACATCAAATGTTACATACTGGTCTCAAGCCATACAAATGTCCTGTTTGTGATAAAGCCTTTACGCAGCAGGCCAACATGGTGAAACATCAAATGTTGCACACCGGCCTTAAACCGTACAAATGTTCCACCTGTGGCAAGGCGTTCGCCCAGCAGGCCAACATGGTCAAACACGAGATGCTTCATACCGGTATTAAACCGTACAAGTGTCCCACCTGTGACAAAGCATTTGCCCAGCAAGCGAACATGATGAAGCATCAAATGTTGCACACGGGATTGAAGCCGTACAAGTGCGGCACGTGCGACAAAGCGTTTGCCCAGCAGGCCAATATGGTCAAGCATCAGATGCTGCATACCGGTTTAAAACCGTACAAATGCAATACCTGTGGCAAGGCATTCGCCCAGCAGGCCAACATGGTCAAACACGAGATGCTTCATACCGGAATAAAGCCATACAAATGCTCGGTTTGTGATAAAGCCTTTGCCCAGCAGGCCAACATGGTCAAACATCAGATGCTCCACAGCGGAATCAAACCGTACAAATGTCCTACCTGCGACAAAGCATTCGCCCAGCAGGCGAACATGGTGAAGCATCAGATGCTCCATACGGGAGAGAAACCATTCAAATGCAAAAGCTGTGATAAGGCTTTCTCACAAAACGCCAATCTGAAAAAGCACGAAATGGTACATCTCGGCATACGGCCCCACACCTGCCCGCTGTGCACGAAGTCCTACTCGCAGTATTCGAACCTGAAGAAGCATTTGCTGAGCCACCAGAAGCAGGCGATCAAGCAGGAGCAACAGAACGGTCAGGTGATGGCCATCCTCTACAGCTGCCAGACGTGCAAGATGCAGTTTGAGGATATCATCGAGTTCGAGCGCCACACCAGACGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCCCGATGCACATTCCGTCGGCCATCCTTACCTCCGTCATCTCGTCGTCGGTCGGCTCGAACGTGACCGCGCACAATCTGGTGTCGGCCCACTCGCACCACGGCGGCCATATCCTGTCGCCGCTGTTCCACATTCCGCCGTTCAACAACAACCACAGCACATAA
Protein Sequence
MFYPLQTQFDDGVIELTRSEMLQQDHLVDNKHFVVSLSLGNTLINLNKIKCPQCRKRFDTMEEMEQHRTKHLTENKFKCEICSKEFPSHSSMWKHTKAHTGERPFVCQICNKGFTQLANLQRHDLVHNGLKPFKCPICEKCFTQQANMLKHQLLHTGLKPYKCPVCEKAFSQHANMVKHQMLHTGLKPYKCPVCEKAFTQHANMIKHQMLHTGLKPYKCPVCDKAFTQQANMVKHQMLHTGLKPYKCSTCGKAFAQQANMVKHEMLHTGIKPYKCPTCDKAFAQQANMMKHQMLHTGLKPYKCGTCDKAFAQQANMVKHQMLHTGLKPYKCNTCGKAFAQQANMVKHEMLHTGIKPYKCSVCDKAFAQQANMVKHQMLHSGIKPYKCPTCDKAFAQQANMVKHQMLHTGEKPFKCKSCDKAFSQNANLKKHEMVHLGIRPHTCPLCTKSYSQYSNLKKHLLSHQKQAIKQEQQNGQVMAILYSCQTCKMQFEDIIEFERHTRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPMHIPSAILTSVISSSVGSNVTAHNLVSAHSHHGGHILSPLFHIPPFNNNHST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00108046;
90% Identity
iTF_00107116;
80% Identity
iTF_00107116;