Aqua000655.1
Basic Information
- Insect
- Anopheles quadriannulatus
- Gene Symbol
- Rfx2
- Assembly
- GCA_000349065.1
- Location
- KB667511.1:581117-614947[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.82 5e+03 -2.3 0.1 17 31 216 230 210 237 0.80 2 2 4.3e-37 2.6e-33 113.9 0.1 1 78 357 434 357 435 0.98
Sequence Information
- Coding Sequence
- ATGGCGACACGTTTAGCAGCGCAGCGAAACTTTATTGCCGTGATTCCCGCCGTAAGCGGAGGGTCTGCTTCCGTAACAGTCGAGCCTGCTGGCGAAGGAGGAACCACAGCAGTACAGAAACCCGTCACTGAACCCGCTGAGACCGAAGGCACAGCGAACGGTACTAGTCAAACCACGGCCGAGGTAGTAACGGTCAGTGTGGCAAGCTCATCCCCAACCGTGATGACTACCCGCCCTGGCGCACATTCGACACAGCTACCCACAATCACCATTGCCGGTGGTGGGCTGAAAAATGGAAACGCGAAAGGATCGCTCGTGCCGACTGCCCTGCTGGCAAACAATTCCAACATCATGAACATCCTGAGTAACGCAAATGGACTGTCGTTGCAACAAATCATTCAGCAGAAGAAAATTGTGATAAACACAAACGGTACGCTGATCGACCTAGTACAGTTGAATGACGATAATGAAAGTGTCGAGATCAAGGCCGACGGTGAGAAGCTGCTGGACAGTACGACTGCAAACGAGAGCGTGGAAAGTGGTAGCTCTGGTTCGGAAGCCACTGCAGACGAGACGCCACAGGTGGCCGTCGTGCAGAGTCCGGGCGGTGGTACGCCTCAGTACATAACCGTAACAGTTTCCTCGCCCGATAACGTGCCCAACCAACACACCTACGTGCAGTATGTCGACTCGGACATGTACAACACTTCCGGCCAGGGACAGACGCAAATGACCTATCCCGTGTACACCGTTGGGGATTACGGCACAAATGGGCAGCAGCAGCAACAGCAGTACTACACCACGGGTGGAGCCTACGGTACAGCGGGTGCCGGCACGGGAAGCACACACACCGACACTACCGGCAACGGCACCAGCAACGGTACTGGCACCACCGGAACTGGCCCGAATGGCGTCAATGGCAGCGTATCGTCCGGCAACGGCGGTTCCGCTGCCGGCAACGCTAATCAGCAGCAGTACATTGTGCCCGTGGATGAGTCGGTCCTGCTCGGCAGTGCCGGCAGCGGGAACACTTCCGGTGCGCAACAGCAGCAGTCCGATTCGTCGCCACAAAACATGACGGTGAGCTGGCTGATGGAGAACTACGAAACGGCGGACGGTGTCAGCTTGCCGCGATCGACACTGTACAACCACTACATGTGGCACTGCAACGAGAACAAGCTGGACGCGGTGAATGCGGCCAGCTTCGGCAAACTGATCCGTTCGGTGTTTAGCGGGCTGCGGACGCGCCGGCTGGGCACGCGGGGCAACAGCAAGTACCACTACTACGGCATTCGCATCAAACCGACGTCCCCGCTGGTGCATGCGATCGAGTGTAAGCCTCAGCACGGTTCGGGCGGTGTTGGCGGGCTCGGCGGAATGGTTGGTCACCATCAGCAGCTGGGTGGAAGCAACGGGCTCGGTGGCGGAAATGGAACGGGCGGCAACAATGGGATGCATGGCCACGCCGGAGGCGGCAATCACGCGAACGGACTGCATGGCAGCAATGGCAGTTCCATGGGGCACGGCGGTGGTGGTGGTGGTGGTGGTGGCGGCGGCGGTGGCCATTTACAGCAAGGTGTGGTTGGGGGTGCAAATGGTGGCGGTGGAAGTGGAGGCGGCCATGGTATGGCGATGCACCATGGTCGTGGTAAGAAGAACAGCTTCAAGGCGGAAATGCCCGAGTCCTGTGCGCAGTATCTGGGCGATCCGAACGGTGCCATACCGCAGTTTCCGATCATAGACATGATTCACCCCCTGCCGGACGATATCACAATGGAGGACGTGGACACGCTGCGCTCGATCTACCGCGAGCACTGCGAGGCGTTCCTGGATGCTATCCTGAACCTGGACTTCAACATGATCGAATCGCTGTGGCGCGAGTTTTGGCGCGCCGAGAACAACAACAACAACGGGGACGAGTGCGAGGAGGAAAAGTATCTCAGCAAGCAGAAGCTGTACCTGCTGACGCAGTGCGAACCGGTGCAGGAGTTTGTCAAGCACGTCGACCTCCAGTTCTACCAGAGCATGGTGGACGTGCTGATCCCGGACGTGCTGCGACCGATACCGACCGGGCTGACCCAGGCGATTCGCAACTTTGCGAAGAATCTGGAGAACTGGCTAACGTCGGCGATGGGCGGCTGCCCGGAGCCGATCGTCGCGATAAAGCTGTCGGCGGTGGCCGCCTTTGGGCAGACGCTGCGCCGCTACACCTCGCTCAACCATCTGGCGCAGGCGGCCCGGGCCGTGCTGCAGAACGGCACGCAGATCGCCCAGATGCTGAGCGATCTGAACCGGGTCGACTTCCGCAACGTGCAGGAGCAAGCCTCCTGGATCTGCCAGTGCGATACGGCGGTGGTGCAGCGGCTCGAGAACGACTTCAAGGCCGCCCTGCAGCAGCAGAACACGCTCGAGCAGTGGGCGGGCTGGCTGCAGAACGTGGTCGATGACGCGCTGCAGGAGTACCGGGGCAAGCCGAGCTTCGTGCATGCCGCCAGACAGTTTCTGCTCAAGTGGAGCTTCTACAGCTCGATGGTGATCCGCGATCTGACACTCCGGTCGGCCGGCAGCTTCGGCAGCTTTCACCTCATACGGCTGCTGTACGACGAGTACATGTTCTTCATCATCGAGCATAAGGTGGCGAAGGCGACCAACACTACGCCGATTGCGGTTATGGGAGAGAAAATCAACTCGCGCCCCGTACAAGACGATCTGGACCGGATGCTCTACACCAGCGAGTACGGCATGGTCAACGTGAAGCTGGAGCCGAGCGCGAAACGGATGCGCAGTTAG
- Protein Sequence
- MATRLAAQRNFIAVIPAVSGGSASVTVEPAGEGGTTAVQKPVTEPAETEGTANGTSQTTAEVVTVSVASSSPTVMTTRPGAHSTQLPTITIAGGGLKNGNAKGSLVPTALLANNSNIMNILSNANGLSLQQIIQQKKIVINTNGTLIDLVQLNDDNESVEIKADGEKLLDSTTANESVESGSSGSEATADETPQVAVVQSPGGGTPQYITVTVSSPDNVPNQHTYVQYVDSDMYNTSGQGQTQMTYPVYTVGDYGTNGQQQQQQYYTTGGAYGTAGAGTGSTHTDTTGNGTSNGTGTTGTGPNGVNGSVSSGNGGSAAGNANQQQYIVPVDESVLLGSAGSGNTSGAQQQQSDSSPQNMTVSWLMENYETADGVSLPRSTLYNHYMWHCNENKLDAVNAASFGKLIRSVFSGLRTRRLGTRGNSKYHYYGIRIKPTSPLVHAIECKPQHGSGGVGGLGGMVGHHQQLGGSNGLGGGNGTGGNNGMHGHAGGGNHANGLHGSNGSSMGHGGGGGGGGGGGGGHLQQGVVGGANGGGGSGGGHGMAMHHGRGKKNSFKAEMPESCAQYLGDPNGAIPQFPIIDMIHPLPDDITMEDVDTLRSIYREHCEAFLDAILNLDFNMIESLWREFWRAENNNNNGDECEEEKYLSKQKLYLLTQCEPVQEFVKHVDLQFYQSMVDVLIPDVLRPIPTGLTQAIRNFAKNLENWLTSAMGGCPEPIVAIKLSAVAAFGQTLRRYTSLNHLAQAARAVLQNGTQIAQMLSDLNRVDFRNVQEQASWICQCDTAVVQRLENDFKAALQQQNTLEQWAGWLQNVVDDALQEYRGKPSFVHAARQFLLKWSFYSSMVIRDLTLRSAGSFGSFHLIRLLYDEYMFFIIEHKVAKATNTTPIAVMGEKINSRPVQDDLDRMLYTSEYGMVNVKLEPSAKRMRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00103424;
- 90% Identity
- iTF_00093216;
- 80% Identity
- -