Aplu004744.1
Basic Information
- Insect
- Anopheles plumbeus
- Gene Symbol
- ham
- Assembly
- GCA_034621735.1
- Location
- JAOEFI010000004.1:6537646-6539202[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.68 1.8e+03 -0.8 0.0 11 26 90 105 85 111 0.82 2 4 1.5e-05 0.04 14.1 0.0 9 45 292 328 288 332 0.94 3 4 0.0026 7.1 6.9 0.5 21 45 332 356 328 361 0.89 4 4 0.00086 2.3 8.5 0.3 20 45 360 385 356 392 0.88
Sequence Information
- Coding Sequence
- ATGCGAGAGAAGGACCACTCACCGCGCAAGATGCTGCCAAGTCCAAAGCAAGGGGCAGTCTATCCGCTGCTCGGCCTCGGATCCACCCTGCCGGCCCCGTTCGATCTCTCGCTCGTCAACCGTTCCTCGTCCTCGAACctgctgcaccagcagcagcagcaccagcagagCCTCGCCGAGCAGCCGCTCGACCTACGGGTGGAGCGCAAGAAGTCCTCCAACGCTAGCGGGGGCggcacctccaccaccacctcgtcCGACGACGAGGGGACCGATCCGCCGCGCGCCAGCTCCACCGACAGCAAGCCCAGCAGCGGCAATGTGATATTCTTTAacgataacaacaacaacaccaacaatctgaacaacaacaacaacaaccacaccaAGTCGTCCGATAGCAATAAGAGCCCAAGTCCCacgaacaacagcagcaaccaccaccaccaccaccatcatcaccacaacaacaacaacaataacaacaacagctcgaaatacaccaacaacaatcacATCAACATCAAGGATGAGTTCCGAATATCGAACATGGCGAACCACAGCCCGACGGGCCTGTTTCCGCCGCCCGGTCTCAACCCGCTGATGCTGGAGGCGATCGCGAAGGCGGGACTGCCGCTGCCGTACCGTGGTTCCTTCCTGCCGCCCCGCTCCCCCGTGTCCTACGACCTGCAGCGGCTAAAGGAGCGGGAAGCGCTCGCCGCCAGCCTGTCCCAGCTGCGCCAGAGTGCGACGAACGGCGGGGGCGctggcgggggcggcggtggtggtggcggtggtggtggaggcggcggaggaggcggtggcggaaacgtgctgaacaacaacaatgcgAACATCATCAACCACAACCTGCCGCCCGGAACGGCCGTTCCGGGGGCGCACGGCAAGAACAAGGACCGGTACGCGTGCAAGTTCTGCGGTAAGGTGTTCCCGCGCTCGGCCAACCTGACGCGCCACCTGCGGACGCACACGGGCGAGCAGCCGTACAAGTGCAAGTACTGCGAGCGGTCCTTCAGCATCTCGAGCAACCTGCAGCGCCACGTGCGCAACATCCACAACAAGGAGCGGCCGTTCAAGTGCGCCCTCTGCGAGCGGTGCTTTGGCCAGCAGACCAACCTAGACCGGCACCTGAAGAAGCACGAGGCGGACGCGGCCGGGCTCGGGCTCGGGCTGGACGAGCGGCTACGGGCGGCCCGACGGAACTCCCGCGGCATCCCGGAGGACTCCTACTTCGAGGAGATCCGTTCGTTCATGGGCAAGGTGACGCAGCTGCCGATCCCTCTGcgattgcagcagcaacagcagcagcagcaatctcCCACGTCCCAGGCGCACGCCAACTCCGGCGGTGACAGTCCGTTCAGCCGACGCCACCGGGGTCGTCAGGATCTGCAGCACGACACGCACTCGTCGCGCAGCTCGACACCGTCGGACGAGGAGCCCGTTTCGCCGGCGGCCAGCTTCGGCAGCCAGCAGGACATCAAGATggagacaaacaacaacgaggACGGCGACGAACCCTTACAGGTCACCTGA
- Protein Sequence
- MREKDHSPRKMLPSPKQGAVYPLLGLGSTLPAPFDLSLVNRSSSSNLLHQQQQHQQSLAEQPLDLRVERKKSSNASGGGTSTTTSSDDEGTDPPRASSTDSKPSSGNVIFFNDNNNNTNNLNNNNNNHTKSSDSNKSPSPTNNSSNHHHHHHHHHNNNNNNNNSSKYTNNNHINIKDEFRISNMANHSPTGLFPPPGLNPLMLEAIAKAGLPLPYRGSFLPPRSPVSYDLQRLKEREALAASLSQLRQSATNGGGAGGGGGGGGGGGGGGGGGGGGNVLNNNNANIINHNLPPGTAVPGAHGKNKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFKCALCERCFGQQTNLDRHLKKHEADAAGLGLGLDERLRAARRNSRGIPEDSYFEEIRSFMGKVTQLPIPLRLQQQQQQQQSPTSQAHANSGGDSPFSRRHRGRQDLQHDTHSSRSSTPSDEEPVSPAASFGSQQDIKMETNNNEDGDEPLQVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00108529;
- 90% Identity
- iTF_00106073;
- 80% Identity
- iTF_00106073;