Basic Information

Insect: Anopheles plumbeus
Gene Symbol: -
Assembly: GCA_034621735.1
Location: JAOEFI010000006.1:32205316-32207655[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.4 3.9e+03 -1.9 0.6 15 31 102 121 99 135 0.74

2 12 4.3 1.1e+04 -3.4 0.0 27 45 221 239 219 241 0.82

3 12 0.64 1.7e+03 -0.7 0.0 26 32 388 394 381 405 0.75

4 12 0.77 2.1e+03 -1.0 0.0 27 47 472 492 469 497 0.83

5 12 0.0078 21 5.4 0.0 21 45 494 518 488 521 0.89

6 12 0.00038 1 9.6 0.0 21 44 522 545 518 550 0.91

7 12 0.0071 19 5.5 0.1 21 45 550 574 546 579 0.89

8 12 0.24 6.5e+02 0.6 0.0 21 47 602 628 589 631 0.83

9 12 0.00028 0.75 10.0 0.1 21 52 631 662 621 663 0.82

10 12 0.069 1.9e+02 2.4 0.0 22 44 688 710 685 714 0.88

11 12 0.0025 6.7 7.0 0.1 21 48 715 742 711 746 0.86

12 12 0.00046 1.3 9.3 0.0 21 45 743 767 739 770 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.4	3.9e+03	-1.9	0.6	15	31	102	121	99	135	0.74
2	12	4.3	1.1e+04	-3.4	0.0	27	45	221	239	219	241	0.82
3	12	0.64	1.7e+03	-0.7	0.0	26	32	388	394	381	405	0.75
4	12	0.77	2.1e+03	-1.0	0.0	27	47	472	492	469	497	0.83
5	12	0.0078	21	5.4	0.0	21	45	494	518	488	521	0.89
6	12	0.00038	1	9.6	0.0	21	44	522	545	518	550	0.91
7	12	0.0071	19	5.5	0.1	21	45	550	574	546	579	0.89
8	12	0.24	6.5e+02	0.6	0.0	21	47	602	628	589	631	0.83
9	12	0.00028	0.75	10.0	0.1	21	52	631	662	621	663	0.82
10	12	0.069	1.9e+02	2.4	0.0	22	44	688	710	685	714	0.88
11	12	0.0025	6.7	7.0	0.1	21	48	715	742	711	746	0.86
12	12	0.00046	1.3	9.3	0.0	21	45	743	767	739	770	0.91

Sequence Information

Coding Sequence: ATGCTCGGTAAATATGCTGAGACGAGTTCCAGCTCGATGATGAACCTGGAAAATGGTCTCCGGAACCGGGTACTGTACCATCAGAACATGATGGGTATGAATTTGATGGCCGAGTTCTACCACAATCCTCCATCTCTTACGAATCCttccggcggcagcggcggtggtggtatcGGAGCTGGAACTATGGTGTCACAATCGCAAAAGGTACTCAACGGCTTGGCGGTTGCTGGGGGAAGTAACCTACAATCTCAACTGACCAGCAATGGGCCTGTGGCGACCACAGTGGACGTATGCGCTGCACCAACATCGAGTAGCGCATCGCAGCAATCTTTGACGCAATTTCAATGTCAAATCTGTCAAAAGAGCTTCATCTCCGGCGCGGTTCTCGCGCAACATATTAAAACCCACGAAAATGACTACATATCCCGGGAAGGAACTGGGCCTAGCGGAGGATATGGTCAGCAACAACCACAGCAATCCGTAACGTCCACCGGATCTCCAGTAACGGCCGTTACATCGAGTAGTAAAACTAGTCCTCCACTGCTCGCACAGCATAGCATCAAAAGCGAGTATCTTGGCGGAGGTGCTGCCACGTCGGCGCCACTTCCCAGTGTGGGTCAGTTTTCTCCTGCGTACGGCATAACGAAGCAGTTTGACTGCCAAATTTGTCACAAATCCTTCATGACGATGGTTAATCTAAATTTGCATATGAAAATTCACGACAATGAGTTGAAGtcagcagctgctgttgccgccgcCACAGCTCACATTTACTCCCACGCGGCTGGCGGAACGACCGAAGGGGCAATGTCCAATTACCATCACCCGCACCCCAATCATCACAACTCGCAGCAACACAATCCGATGATGGGATCATCGATGGCGACTATTACAGACGGCTCGTGTCAGATTTGTCACAAAACGTTCAGCACGGCGGAGCAGTTTACAGTGCACATGAAGATCCACGAGAATGAGTTCAAAACCCGGGCTCTCTACCAGCCGGGTAACACAAACTCCAGTAGCAGTGGAGGAGGAAGTGCGGTAGTTAATGGTGCGACTGCAGTGAACGGGTCAGATTCGTTTTACCCTTCACCACAACCGCAACAGCTACTCGCTCAGCACACACCAGCACTGCAGCTCGATGCAACGAAAGGACACCGCTGTCCAATCTGTCACAAAATGTCCAACAATATTATTGAACACATTAAGCAGCACGAAGGACAGCTAATGATGGGTGATGTCGGTGGGAGTAGTAGAAGCGGAACTGTTCGGGCAATATCGGATGTGGGATCCCCTGGTCCCGTAGCAGTAGGCAGGACAGGTTACCCTTTCAATGAAGATTCACAATCATCTCtagaaggagaagaaagcgaagatCATGCTGGTGGTGCCGAAATCAGGAAGCACGAGTGCTTGATTTGTCACAAAAAGTTCTCGAGCTCGGGAAATTTGGCCATTCACATACGGGTGCACTCGGGGGAGAAACCGTTCAAATGTAGTGTCTGCGGGAAGGGTTTCATCCAATCGAACAACCTGGCTACTCATATGAAAACGcacacgggggaaaaacctTACGCGTGTacgatttgtggaaaaaatttCAGCCAATCGAACAACCTGAAGACACACATCCGGACGCACACGGGGGAAAAGCCGTACGCGTGTACAATCTGTGGCAAACGTTTCAACCAAAAGAATAATCTGACCACGCACATGCGGACGCACCAGCTGGTGTGTATGGTGTGCGGTGTGCAGTTCATGCATCCTTCAGATTTGGCGAATCACATGAAATTCCACAACGACGAAAAGCCTTACATCTGCTCGGTATGCAACAAGGTGTACCTCAACCTGGACGAGCTAACCGAGCATATGAAAAAGACGCACAACCAGGTTAAGCCGTACCGATGTCACATCTGCGACAAAACGTTCACACAGTCGAACAACCTGAAGACACACATCAAGACGCACATCTTTCAAGACCCTTATAAGTGCCAGATGTGTTCACGCTCGTTTCAGAAGGAAGATGACTATTCGCAGCACATGCTCGTTCACACGGCTGACAAGCCGTACGAGTGTACGTACTGTGGCAAGCGGTTCATTCAGTCAAACAACCTGAAAACGCACGTCAGGACACACACGGGAGAAAAACCGTACAGGTGCAGTATCTGCGCAAAGCACTTCAACCAGAAGAACAATCTCAACACGCATATGCGCATCCACACAGGCGAGAAGCCGTTCGAATGTACCATCTGCGACAAGCGTTTCAATCAGTCGAACAATCTGAACAAGCACATCAAAACGCATGGTCAGGAGAAGGAACAGCAACTTGCGAGTTGA
Protein Sequence: MLGKYAETSSSSMMNLENGLRNRVLYHQNMMGMNLMAEFYHNPPSLTNPSGGSGGGGIGAGTMVSQSQKVLNGLAVAGGSNLQSQLTSNGPVATTVDVCAAPTSSSASQQSLTQFQCQICQKSFISGAVLAQHIKTHENDYISREGTGPSGGYGQQQPQQSVTSTGSPVTAVTSSSKTSPPLLAQHSIKSEYLGGGAATSAPLPSVGQFSPAYGITKQFDCQICHKSFMTMVNLNLHMKIHDNELKSAAAVAAATAHIYSHAAGGTTEGAMSNYHHPHPNHHNSQQHNPMMGSSMATITDGSCQICHKTFSTAEQFTVHMKIHENEFKTRALYQPGNTNSSSSGGGSAVVNGATAVNGSDSFYPSPQPQQLLAQHTPALQLDATKGHRCPICHKMSNNIIEHIKQHEGQLMMGDVGGSSRSGTVRAISDVGSPGPVAVGRTGYPFNEDSQSSLEGEESEDHAGGAEIRKHECLICHKKFSSSGNLAIHIRVHSGEKPFKCSVCGKGFIQSNNLATHMKTHTGEKPYACTICGKNFSQSNNLKTHIRTHTGEKPYACTICGKRFNQKNNLTTHMRTHQLVCMVCGVQFMHPSDLANHMKFHNDEKPYICSVCNKVYLNLDELTEHMKKTHNQVKPYRCHICDKTFTQSNNLKTHIKTHIFQDPYKCQMCSRSFQKEDDYSQHMLVHTADKPYECTYCGKRFIQSNNLKTHVRTHTGEKPYRCSICAKHFNQKNNLNTHMRIHTGEKPFECTICDKRFNQSNNLNKHIKTHGQEKEQQLAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00105949;
90% Identity: iTF_00105949;
80% Identity: iTF_00105949;