Aplu005845.3
Basic Information
- Insect
- Anopheles plumbeus
- Gene Symbol
- Hr39
- Assembly
- GCA_034621735.1
- Location
- JAOEFI010000004.1:24311887-24315183[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1 5.2e+03 -3.4 0.3 92 92 111 111 75 224 0.54 2 4 0.41 2e+03 -2.1 0.8 78 78 421 421 362 508 0.51 3 4 7.4e-08 0.00035 20.2 0.0 1 21 593 613 593 620 0.93 4 4 2.8e-76 1.3e-72 245.6 0.0 201 408 731 948 680 948 0.88
Sequence Information
- Coding Sequence
- atgaaaataatgacaTCGACGGAGGTAAACGGAGGaggggctggtggtggaggaggaggtggcggtggtggtggagtgacGGCGGGTAGCCGCGGGGGAAACGTGTCCGTCACGACAATTAATCGCGACGATGGAGGTACCGCCGGAGCCCTCGATGCGGTGACGGCGGCTACCAAACTAGCGCCACCTGCCGCTATTTCGGGAGGAGCAGCTGGGCTgcttaacaacaacaatagcaGCACCagtaacaataacaataacaacagtaacaacaacaacattagcagcaccaacagcagtgTGAACAACAATTATACACCAGCTGGCGGGAGTAACGCCGGTGGTACCACACCAGCAATCTTCGGAAACGTTGGCGGAGGGATCCGGATAACCGTGCCGAAGATGGAGGAATCGGACGAGTCCGATACGGAGCTGTCGAACATCGAAAAGACAGCCGCAGCTGTCGCATTGACGAATGGGGTGAATATGCGCGAGGAGCGTAGCGCCAGCAAGAGTCATCCACGGCCGATGTCCTGGGAGGGTGAGCTGTCGGAACCGGAGGAACCGATGCTGGTGGACAACGAGAACAGCAGCTCGAGCTCGAGTGTGGGCAAACTACCGAATGCTCCGTCTTCCCCCGTGGCCATGATCGTGCCGAAGCAGGAAGAGGACCAGGACGCGCCGGCCTGCGGACCAGGCATTACGGAACCACTTGCTCTCACCGCCTCGAACAGCGGCAGCTATAGCATTTCCCTTCATGGCCATGGTACCACCCACGCTTTGAGAAATGTTCCTAGCagcaccgggaacgggaacaaCAGCTCGAGCAACTCGCCCCTGCCGCACCGAATGCTGATCAAGCCGGAAGCAGGCCTTCCACTGATCAATCCGGGCGTGGCGTACAACGTGGCAGGACTCAGCAATGCATCCTCCAACATTCCATCTACCACGGGAGGAGCACCGCCATTGCTGCCGTCGTCCATGAAAAAGGGACTTCCAGATGTGATCAACCTGAAATACGAGCTTCCACCCGGTGGAATAGGAGACCAAGGTGGTGGAGGCAGCGGTCTGCCACCGGGCGCGATTCACTCGCCACTTCTGGTTCGCTCAAAGACTACACTTTTGCCGGCGAATCCGAGCCCCGACTCGGCGATCCATTCGGTGTATACGCACAGCTCACCCAGTCAGTCTCCACTCACATCCAGACACGCTCCGTACACTCCATCGCTCAGTCGAAACAACAGTGACGCGTCCCACAGTAGCTGCTATTCTTATAGTTCAGAGTTTAGCCCGACGCACTCGCCCATCCAGGGGCGGCACAGCATATTCGCTGGAAGTGGCGGAGGGAATGGAGGTGCAGCTGGAGCATCGGGTGGCCCGTCGTTCAATGGGTCTCCGCTGCATCACTCAGTATTATACAAACCGATGCTGGACAGTgagcaacatcagcagcagttgcatcagcaccagcagcaacaacagcaagctCTGAAGCAGGAGGAACTCCTGTACGATGGGGAGCATCTTCCATCTCCCGGTATTTCCCGACAGCAGCTGATAAACAGCCCGTGTCCAATTTGTGGCGATAAAATATCCGGCTTCCATTACGGCATCTTCTCGTGCGAGTCGTGCAAGGGCTTCTTCAAGCGTACGGTGCAGAACCGTAAAAACTACGTGTGCCTTAGGGGTGCTGCCTGCCCGGTGGCGATAGCGACGCGCAAAAAGTGTCCCGCCTGCCGGTTCGAGAAGTGCCTTCAGAAAGGAATGAAGTTGGAAGCTATCCGTGAGGATCGAACACGCGGTGGCCGTTCCACGTACCAGTGTTCGTACACCCTTCCGGGACCGCTGGTGAATGCGGCGGGGATGCAGAGTGGCGATTCACCGGGAGTTGGACCATTCCAGTACGGAGGATCGGTCCGTTCGCCGTACGTAGGTGCTGGAGGCGTCGCTTCTGGCCAGCAGATGAAGGTAGAAGCTTCGGATGGTACCAGTGGTGGAGTGATGGCTGGGGGAGGCAACGGTGGACTGAACGGTCTGAATATCGCAGACGGGAGCAGTGGAGCCGGCGGTGTTGGCAATCATATGCAACCTGGCATTCCAGTTCTGTTACAAGAAATCATGGACGTTGAACCACTGTGGCAGTACAATGCGGCGGAGTTGGCTCGGCTGAATCAACCTCCCCCAGCGGTTAGCTGTGCGGCGATCGCGAGCAATCCTCTGCTCTCCAGTGCCGGCATCTCGTCCGAGAGCAGCCCTGATTTGATCGCAAACCTTTGCAACATCGCCGACCACCGACTTTACAAGATCGTGAAGTGGTGCAAGAGTTTGCCACTCTTTAAGAACATTTCGATCGACGACCAGATCTGCCTGTTGATCAACTCCTGGtgtgagctgctgctgttttcctgctgctaCCGTTCGATTGGAACACCGGGAGAGATCAAGATCTCCCTTGGGAAGTCGATCACGTTGGAGCAGGTGAAGAATAGTGGACTGCAAACATGTATTGAACGAATGCTAAATCTGACCGATCATCTACGACGATTGCGCGTCGATAAGTATGAGTACGTAGCGATGAAAGTGATCGTACTGCTTTCATCGGACACGTCCGAGCTGAAGGAATCCGAAAAGGTTCGAGCTAGCCAGGAGAAGGCCCTGCAAGCGCTGCAAGCCTACACGTTGGCCTACTACCCGAAGTCACCGGCTAAATTTGGCGAGCTGTTGCTGCGGATTCCCGAACTTCAGCGAACGTGTCAGgttggaaaagaaatgctgaACATCAAATCGAAGGACGATGAAGAGCCTTCGTTCAACCTGCTAATGGAGTTGCTCCGTGGGGAGCACtga
- Protein Sequence
- MKIMTSTEVNGGGAGGGGGGGGGGGVTAGSRGGNVSVTTINRDDGGTAGALDAVTAATKLAPPAAISGGAAGLLNNNNSSTSNNNNNNSNNNNISSTNSSVNNNYTPAGGSNAGGTTPAIFGNVGGGIRITVPKMEESDESDTELSNIEKTAAAVALTNGVNMREERSASKSHPRPMSWEGELSEPEEPMLVDNENSSSSSSVGKLPNAPSSPVAMIVPKQEEDQDAPACGPGITEPLALTASNSGSYSISLHGHGTTHALRNVPSSTGNGNNSSSNSPLPHRMLIKPEAGLPLINPGVAYNVAGLSNASSNIPSTTGGAPPLLPSSMKKGLPDVINLKYELPPGGIGDQGGGGSGLPPGAIHSPLLVRSKTTLLPANPSPDSAIHSVYTHSSPSQSPLTSRHAPYTPSLSRNNSDASHSSCYSYSSEFSPTHSPIQGRHSIFAGSGGGNGGAAGASGGPSFNGSPLHHSVLYKPMLDSEQHQQQLHQHQQQQQQALKQEELLYDGEHLPSPGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAACPVAIATRKKCPACRFEKCLQKGMKLEAIREDRTRGGRSTYQCSYTLPGPLVNAAGMQSGDSPGVGPFQYGGSVRSPYVGAGGVASGQQMKVEASDGTSGGVMAGGGNGGLNGLNIADGSSGAGGVGNHMQPGIPVLLQEIMDVEPLWQYNAAELARLNQPPPAVSCAAIASNPLLSSAGISSESSPDLIANLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCYRSIGTPGEIKISLGKSITLEQVKNSGLQTCIERMLNLTDHLRRLRVDKYEYVAMKVIVLLSSDTSELKESEKVRASQEKALQALQAYTLAYYPKSPAKFGELLLRIPELQRTCQVGKEMLNIKSKDDEEPSFNLLMELLRGEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00107739;
- 90% Identity
- iTF_00105883;
- 80% Identity
- iTF_00105883;