Aplu007031.1
Basic Information
- Insect
- Anopheles plumbeus
- Gene Symbol
- bab2
- Assembly
- GCA_034621735.1
- Location
- JAOEFI010000006.1:7024737-7040482[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.5e-11 4.1e-08 32.9 0.0 2 39 731 769 730 773 0.90 2 4 2.3e-12 6.3e-09 35.5 0.1 2 39 785 822 784 825 0.94 3 4 3.6e-18 9.6e-15 54.1 0.0 3 45 841 884 839 884 0.97 4 4 2.4e-17 6.6e-14 51.4 0.0 1 43 891 934 891 935 0.96
Sequence Information
- Coding Sequence
- ATGGATACCAAAGCGTCCTCGTCGGGCCCGGCCCCTACCCATCTGCCGCCGTCCGCGTACGCAGCGACGTCACCGTACTCGAAGGCGGCCAGATCTTCGCATCAGTATTTTAGTCTAAGGTGGAACAACTACCAGTCGAACATGACCTCCGTGTTCCACGAGCTGCTCGAGTCGCAGTCGTTCGTCGACGTCACGCTGGCCTGCGAATACAATTCACTAAAGGCGCACAAGGTGGTTCTGTCGGCATGTTCAGCATATTTCCAAAAAATACTGCTCGACAATCCGTGCAAACATCCGACCATCATCCTGCCGGCGGACATTTGCTTTTCCGACCTGCAGTTCATCATCGAGTTCGTCTACCGGGGCGAAATTGACGTCTCCGAGGCGGAACTTCAGAGTCTACTGAGGACGGCGGAACAGCTGAAAATCAAGGGCCTGTGTGAGGTGGGCGAACCGCAGTACGAGCAGGACTATTCGCCCGCGGTCAAGCGCTACAAGCCGTACCGTTCGCGGTCGCCCCCGGACaaccggcaccagcaccaccaccaccagcagcctccaccgccaccaccaccgccacccgcccCACCCTCGTCGGGGTCGTCCGGGTCGggttccaccggtggcgggGGTCGCGCCGGTTCGCAGGGcggcaacaccaacaacagcagcagctcgtctTCGTCCCAGTCGACGGGCTACAGTGAAAACGGCAAGAACTGTAGCACCGGCAAGGGAGtaggcggaggaggagggacAACAGCAGGCGGACGAAGCCATTATTATTctgcccagcagcagcaccagcataCCACCTCCCTGCATCACAGcctgcaccaccatcatccccatctgcaccatccgcaccatcCGCTTCATTcgcaccatccgcaccaccaccaccaacacgggGGCGAGTCGggcgcggcagcagcagcaggaggcggcggcggcggccctcaccaccaccaccaccagcagcaccctGTCGGCGAGGACGATGACGGATCGCCTTCCTCGGTCGTAGTGGTAGAAACGCACGACTTGTCCACGACCGGGTCATCCGCGAGCTCCTCGGCAAAGGACAagcacctccagcagcagcagcagcagcagcagcagcagcaacagcagcagcaacaccatcttcaccaccatcatccccaggcgcagcagcagcagcagcatcaactcGGTGGCAAAATGGCCAGCCTGGGAATGGGCGTTGGAATAAACGGTTCCGTCATGGGCGTACCGATGGGCTACTTGGATTTTGCGCCCGAACCGCCCGCCCCGACCGCGACCCCGGTGACGGAACACGTGGACATTAACTGTGCGCCTAGCAGTCACGATACCCGTGATCTGTCCAGTAAGTATTCTGTGCCAAACGATGGTGACTTACGAGTGAAATTCGAAACGTTACGTTCGCTAGATCCTCCCAATTCGGTGCAACTGGACAATCAGGCCGTGgcccatcagcagcagcagcagcagcagcaacagcaacagcagcaacaacagctgcaccatcagcagcaacagcttctGCACCAGCaagcgcagcagcaagcacagcagcagcagcatttactccagcaacagcagcagcagcaaagacAAACGCCCCAGCCAGCGGGTGCGCCGCCGCAACAGAACGACCATCAGCGCAACTCGCCACCCCACATTCAACAacaagcgcagcagcagcagcagctcgtgaTGCTGgtcgatcagcagcagcagcagcatcacccGACCACGCACAGCCCGGCCTCGAGCgtgtcgtcgtcctcttccAGCCAGCATCCGGAGAATCTGGTAACCGGAAGCGGCGGCGtcgggggcggtgggggtcCCGCAACGCCGGGCCCTACGCCgaacaacaacggcaccgggggtggtggcggagaTGAGCTGAAATCGAGACTGAACCTGAAACAGGAAATCATTACCGATGccatcgagcagcagcagacgatGGAGGTCGAGCAGGACCAGTCGTCGATGCACGGCATGGTGGTGACGCCGGAAATATCGGGCATAATGAACCAGAGCCAAATGAGcgATATGTATCAATCGGACGCAAGTGAAGACTCCAAGGCGGGCATCCTGGATGGGTCCTCGATGCAGTATACGAACCTGACGAGcccgaacgaagcgaaaaccCCGACGGGGCCAAAAACGTGGACCGCCGAGGATATGGAGTCGGCACTAGAGGCACTGCGTACTCACAATATGAGCTTGACGAAGGCATCTGCAACTTACGGCATTCCATCGACGACCCTGTGGCAGCGGGCGCACCGGCTCGGCATCGACACACCGAAGAAGGAGGGACCGTCGAAGACGTGGAACGAGGATTCGCTCAACAGCGCCCTCGAGGCCCTGCGGACCGGCACGATCTCGGCGAACAAGGCCTCGAAAGCGTTCGGCATACCGTCTTCCACGCTGTACAAGATCGCGCGCCGCGAGGGCATCCGCCTGGCGGCACCGTTCAACGCGGCGCCCACCACCTGGTCCGCCGAGGATCTGGACCGTGCCTTGGAGGCGATCCGTGCCGGGCAGACGTCGGTGCAGAAGGCTAGCACCGAGTTTGGCATCCCGACCGGCACGCTGTACGGGCGCTGCAAGCGCGAGGGCATCGAGTTGTCGCGCTCCAACCCCACGCCCTGGTCGGAGGACGCGATGATGGAAGCCTTAGAGTCCGTAAAACAGGGACACATGTCGATCAACCAAGCCGCTATCCACTACAACCTACCGTACAGCTCCTTGTATGGCCGGTTCAAACGGGGCAAGTACGACACGCCCAGctcgggcggcggtggcggcggtggtggcagctCGTcaagcgctgctgctgctgctgctgctgctgctaccggcggcggcggtagtgccggcggtggcggcggtgcagGCGGAGGAAGCAGTAATGTTGGCGGTAGTCCCCAGATGGAGTTTAAGATAGAACCACAGCAAAACGATCATAGTCCAGAGAACACGGTAAATTACAGTTATTATTAA
- Protein Sequence
- MDTKASSSGPAPTHLPPSAYAATSPYSKAARSSHQYFSLRWNNYQSNMTSVFHELLESQSFVDVTLACEYNSLKAHKVVLSACSAYFQKILLDNPCKHPTIILPADICFSDLQFIIEFVYRGEIDVSEAELQSLLRTAEQLKIKGLCEVGEPQYEQDYSPAVKRYKPYRSRSPPDNRHQHHHHQQPPPPPPPPPAPPSSGSSGSGSTGGGGRAGSQGGNTNNSSSSSSSQSTGYSENGKNCSTGKGVGGGGGTTAGGRSHYYSAQQQHQHTTSLHHSLHHHHPHLHHPHHPLHSHHPHHHHQHGGESGAAAAAGGGGGGPHHHHHQQHPVGEDDDGSPSSVVVVETHDLSTTGSSASSSAKDKHLQQQQQQQQQQQQQQQHHLHHHHPQAQQQQQHQLGGKMASLGMGVGINGSVMGVPMGYLDFAPEPPAPTATPVTEHVDINCAPSSHDTRDLSSKYSVPNDGDLRVKFETLRSLDPPNSVQLDNQAVAHQQQQQQQQQQQQQQQLHHQQQQLLHQQAQQQAQQQQHLLQQQQQQQRQTPQPAGAPPQQNDHQRNSPPHIQQQAQQQQQLVMLVDQQQQQHHPTTHSPASSVSSSSSSQHPENLVTGSGGVGGGGGPATPGPTPNNNGTGGGGGDELKSRLNLKQEIITDAIEQQQTMEVEQDQSSMHGMVVTPEISGIMNQSQMSDMYQSDASEDSKAGILDGSSMQYTNLTSPNEAKTPTGPKTWTAEDMESALEALRTHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPSKTWNEDSLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWSAEDLDRALEAIRAGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALESVKQGHMSINQAAIHYNLPYSSLYGRFKRGKYDTPSSGGGGGGGGSSSSAAAAAAAAATGGGGSAGGGGGAGGGSSNVGGSPQMEFKIEPQQNDHSPENTVNYSYY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00105917; iTF_00093981;
- 90% Identity
- iTF_00105917;
- 80% Identity
- iTF_00105917;