Aatr001607.1
Basic Information
- Insect
- Anopheles atroparvus
- Gene Symbol
- -
- Assembly
- GCA_015501955.1
- Location
- CALTRM010000060.1:420038-432322[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.4e-12 1.4e-08 32.9 0.0 2 39 579 617 578 621 0.90 2 4 1.3e-12 2.2e-09 35.5 0.1 2 39 633 670 632 673 0.94 3 4 2e-18 3.4e-15 54.1 0.0 3 45 689 732 687 732 0.97 4 4 1.4e-17 2.3e-14 51.5 0.0 1 43 739 782 739 783 0.96
Sequence Information
- Coding Sequence
- ATGGGAGGATTGGGAATGCAGCAGCAGGACAGCTTACTGCGGACGGCGGAACAGCTGAAAATCAAGGGCCTGTGCGAGGTGGGCGAGCCACAGTACGAGCAGGACTATTCGCCCGCGGTCAAGCGCTACAAGCCGTACCGGTCGCGATCGCCGCCGGATAACCGGCACAGTCAGCACCACCACCACCAGCAGCCACCGCCACCGCCTCCACCCGCGTCCGGTGCGTCGGGAGCGACTTCTTCCGCCGGCGGCGGGGGTCGTACCTCGGGCTCGGGAGGTGGTGCCAACACCACCAACAGCAACTCCAACACCAGCGGCTCGTCTTCCTCGCAGTCGACGGGCTACAGTGAAAACGGAAAGAGTGGTGGCAAAGGGGGAGGAGGAACGACAGCAAGAGGAGGAGGAAGTGAACGAAGCCATTATCACCCTTCCCAGCAGCAGCACCACAGCCTGCACCACCATCATCCGCACCTGCAGCATCCGCACCATCCGCACCATCACCCTGCACATCAGCACCTCCACCACCACCTCGCCGGAGAGGACGATGATGGATCGCCGTCGTCGGTCGTAGTGGTAGAAACGCACGACCTGACCACAACCGGACCTTCCGCGAGTTCCGCGACGAAGGACAAGCTCTATCACCTgcagcagcagcatcatcagcacccgcaccaacatcaccatcatcaccaCCGTCCACCGTCGTCCTCGTCTTCGTTCCAGCAGCCGCAGCAAATTGGAGGCAAAATGGCCAGCCTGGGAATGGGCGTTGGAATAAATGGTTCCGTTATGGGTGTACCGATGGGTTACTTGGATTTTGCACCCGAGCCCCCCGCACCGACGGCGACGCCGGTGACAGAGCACGTGGACATCAACTGTGCGCCAAGCAGTCACGATACCCGTGATCTGTCCAATTCTGTGCCAAACGATGGTGACTTACGAGTGAAATTCGAAACGTTACGTTCGCTAGATCCTCCCAATTCGGTGCAGTTGGacaatcaggccgtcgctcatcagcagcagcagcagcaattgcatcatcaacagcagcaggcgcaacagcagcaactgctgcaccagcagcagcaagcccagcaacagcatttactccagcagcaggcgcaacagcagcaggcgcaacagcagcagcaacggcaaacgccgcaacctgcaggagcgccggcgcaacaaaacgaccatcaacgaaactcgccaccccacattcagcagcaagcgcagcagcagcaacacgtcatgatggttgatcagcagcagcaacaccatccgaccacccacagcccggcctctagtgtgtcgtcgtcctcttccagccagcatccggagaatctggtcactggcagcggtggtgccgggggtggtggtggtggttcggtaacgccgggacctacgaacaacaacaatagcagcaacggtgcaggtggggacgagatgaaatcgagactgaacctgaagcaggaaatcatcaccgatgcggcagagcagcagcagcagcagcaGACGATGGAGGTCGAGCAGGACCAGTCGTCGATGCACGGCATGGTGGTGACGCCGGAAATATCTGGCATAATGAACCAGAGCCAAATGAGCGATATGTATCAATCAGACGCGAGTGAAGACTCGAAGGCGGGCATTCTGGATGGCTCTGCGATGCAGTACACCAATCTGACGAGCCCGAATGAAGCAAAAACCCCCACGGGGCCGAAAACGTGGACCGCCGAAGATATGGAATCAGCTCTGGAGGCACTGCGTACTCATAACATGAGTCTGACGAAGGCATCTGCAACTTACGGTATTCCATCCACGACCCTTTGGCAACGGGCGCACCGGCTCGGCATCGACACGCCGAAGAAGGAGGGCCCGTCGAAGACGTGGAACGAAGACTCACTCAACAGTGCCCTGGAAGCGCTGCGCACCGGCACGATCTCGGCGAACAAGGCCTCGAAAGCGTTCGGCATACCGTCTTCCACGCTGTACAAGATCGCGCGCCGTGAGGGCATCCGCCTGGCGGCCCCGTTCAATGCGGCGCCCACCACCTGGTCCGCCGAGGATCTGGACCGTGCCTTGGAAGCGATCCGCGCCGGGCAGACGTCGGTGCAGAAGGCCAGCACCGAGTTTGGCATCCCGACTGGCACGCTGTACGGGCGCTGCAAGCGCGAAGGGATCGAGCTGTCGCGCTCCAACCCCACGCCCTGGTCCGAGGACGCGATGATGGAAGCCTTAGAGTCCGTAAAACAGGGACACATGTCGATAAATCAAGCCGCCATCCACTACAACCTACCGTACAGCTCACTGTATGGCCGGTTCAAGCGGGGCAAGTACGACACGCCCAGTTCGGGCGGCGGCGGCGGCGGCGGTGGTGGCAGCTCGACCAGTGCTACTGCTGCTGCTGCTGCTACCGGCGGTGGTGGTGGTGGCGGCGCAGGCGCCGGCGGAGGAAGCAGTAATGTTGGCGGTAGTCCCCAGATGGAGTTTAAGATAGAACCACAGCAAAACGATCATAGTCCAGAGAACACGcaacattacaatcctgcgctatcaacatcctcgacgcccacgagcaatactccaacgcagcagcagcagcagcagcagcagcagcaacaacagcagcaacagcagcaacagcagctcactcaccatttagtccaacaatcaccgacaccagtcagcattcacgtcaacgaggccccacatcaccatcttgcacatccccatcagcagcttcatcagcagcagcaacagcagatggtggtgatacagcaccagcagcagcagcatcaccacctgcaccatcagccgcagctaatacagcatcacatcattccgcagcagcatcacatcatctaccagcagccgctgcagccgatccagcagcagccacagtaccatccgatgtaccacatcatcaagcaggaaaacgacagaagttga
- Protein Sequence
- MGGLGMQQQDSLLRTAEQLKIKGLCEVGEPQYEQDYSPAVKRYKPYRSRSPPDNRHSQHHHHQQPPPPPPPASGASGATSSAGGGGRTSGSGGGANTTNSNSNTSGSSSSQSTGYSENGKSGGKGGGGTTARGGGSERSHYHPSQQQHHSLHHHHPHLQHPHHPHHHPAHQHLHHHLAGEDDDGSPSSVVVVETHDLTTTGPSASSATKDKLYHLQQQHHQHPHQHHHHHHRPPSSSSSFQQPQQIGGKMASLGMGVGINGSVMGVPMGYLDFAPEPPAPTATPVTEHVDINCAPSSHDTRDLSNSVPNDGDLRVKFETLRSLDPPNSVQLDNQAVAHQQQQQQLHHQQQQAQQQQLLHQQQQAQQQHLLQQQAQQQQAQQQQQRQTPQPAGAPAQQNDHQRNSPPHIQQQAQQQQHVMMVDQQQQHHPTTHSPASSVSSSSSSQHPENLVTGSGGAGGGGGGSVTPGPTNNNNSSNGAGGDEMKSRLNLKQEIITDAAEQQQQQQTMEVEQDQSSMHGMVVTPEISGIMNQSQMSDMYQSDASEDSKAGILDGSAMQYTNLTSPNEAKTPTGPKTWTAEDMESALEALRTHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPSKTWNEDSLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWSAEDLDRALEAIRAGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALESVKQGHMSINQAAIHYNLPYSSLYGRFKRGKYDTPSSGGGGGGGGGSSTSATAAAAATGGGGGGGAGAGGGSSNVGGSPQMEFKIEPQQNDHSPENTQHYNPALSTSSTPTSNTPTQQQQQQQQQQQQQQQQQQQLTHHLVQQSPTPVSIHVNEAPHHHLAHPHQQLHQQQQQQMVVIQHQQQQHHHLHHQPQLIQHHIIPQQHHIIYQQPLQPIQQQPQYHPMYHIIKQENDRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00105758;
- 90% Identity
- -
- 80% Identity
- -