Amin003905.1
Basic Information
- Insect
- Anopheles minimus
- Gene Symbol
- -
- Assembly
- GCA_000349025.1
- Location
- KB663644.1:2931275-2934213[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.1 60 3.9 0.1 2 23 318 339 317 339 0.92 2 12 6.1 3.4e+02 1.6 0.8 9 23 359 373 345 374 0.80 3 12 0.00061 0.035 14.1 1.2 3 23 379 399 377 399 0.96 4 12 6e-06 0.00034 20.5 2.7 1 23 404 426 404 426 0.98 5 12 9.1e-07 5.1e-05 23.0 0.8 1 23 434 456 434 456 0.99 6 12 0.02 1.1 9.4 7.5 1 23 462 484 462 484 0.96 7 12 1.5 87 3.4 1.2 2 23 491 513 490 513 0.87 8 12 0.13 7.3 6.8 0.2 2 23 540 564 540 564 0.95 9 12 1.6e-05 0.00089 19.1 1.2 1 23 568 590 568 590 0.97 10 12 1.1e-05 0.00064 19.6 1.1 1 23 596 618 596 618 0.98 11 12 2.7e-08 1.5e-06 27.8 1.2 1 23 624 646 624 646 0.98 12 12 0.0002 0.011 15.7 3.4 1 23 652 675 652 675 0.94
Sequence Information
- Coding Sequence
- ATGGAAGCCGCAAACGTATCTAAACAAAGCAGCGAAAGAGGCGCGTCAATGCCAGCAGAGCGCAGTAAGCCAGTGGACGAAAAGCTGCCTGCCGAAGTGATGTCCGAAGAGTTTTGTCGAATATGTTTGCTCAAATCTACCAAAGTTAAGCCTTTGATGGAGCGTGTGGACGGGGTAATGATTCCGGAAATGCTGTACAAGCTGTGCGGCCGTCAGATAGAGGTGCAGGAAGGCTATCCGCGCAGCATCTGCCAACGGTGCGTTTGTCACCTGGATTGTGCGTTCCGGTTTCTAAACGAGTTCCACCAGCAGGACGAACGTTTGCGAAGCTTTTATTGGAGCGGTTCCGTGGCGGAAAGATTGCAGGAGTATCAGTCCGAGGGCAAAGAGAAAATCCACAGGCGAATGGAAGAGCTAACCAGCCGGCACAAGGCGCTTTTCAAACAACCCGCAAAGGTGATGAGTAACAAAGAAACCAACACAGTTCGGTCGAAACCGCCAAAAACGCACGACGTTGGTACGAGCATGGATAAGGAACTAATTAATCTTCAACTAGTTAAAACGGAAGACAATTCGGACGATGACATGCTGCTGGAACATTACGTTATGGAAGAGGACAATGAGGAAACGTATCTCGATTACTGTGTCGATAGCGAAACAACGGCAAAGGATCAACAGCTGGTGGCGATGAAAATAGACGTGCTGGAATCGGCGGACGAGGCGGAATCGTACAGTGACGAAAAACCGCCGAGTACAAAAGCGTCCAAAAGCACACGACAACAGCCGATGCGGAGCAAAAAGACGAGGGTAAAGATAGCCTCATCCGATACGCAGGATGAAAGCATACCGACCGATACGGATGATCAGGCCCATGAACAGGTGTACTACGAGGAAACCGGCAgtgaggaggaggaggaagaggaggaagaagaggaaatgtttgatgatcTTCAATGTTACATTTGCGATATGAAGGAGGAAAACGAAGAGCTGTTGCAGCAGCATCTCGATTTACACAACACGATGCTACCATACGACTGTAAATCGTGCCTTGATGACGGTGTGATTGTCCGCACGATTAAAACGGTCTCCTCGCTGCACAATCACTTTCGCTCGCACCATTACCCGTACTGGTGTGAAATCTGCGGTAAACGTTTCTTGCGCAAAATGCAACTGAGGAAGCATAAGGAAAACCATagcaacagtttgtttatgtGCGACGAATGTGGTCGTGGATTTACGCATAAGAAAACGTGGCAAAACCACATCAAACGTCACAAGGCGCTGCGTGCAGAGATGTACAAGTGTAACACGTGCGGCAAAGCTTTCGGCAACAAGGCCCGGTTGGATCGGCACATGCGGCTACATACGGGCGATCGGCCGTTTGAGTGTAAGTACTGCGACAAGCGCTATTACGACCGTCACCAGCTGCAGTGCCACACGGAAAGGCACTTCCGGGAGATTGATTGTACGTGCGAGTTTTGTGGCGATACGTTCACCGGCATAAAGAAGCTAGATGCGCACAAGATTGCGAAGCATCTCACCGGCAAGGAGCTGGAAGATTTTCTCGCCAGCCGTGCGAAACGGGTAAAGCGACAAGCTATCCTGAAGGACGAAACGTGCCCGTACCCGGAATGCAACTATACGGCCAAAACGTACGGTGCGATGTATGTGCACAAGCGTACCAAACATCTGGCGAAGCATCGGTGCGGAATCTGCAACAAATCGTTCGCATTCCAAAACCAGCTCGAGGTCCACGTGAAGCTGCATACGGGCGAGAAACCGTTCCAGTGTGAGCTTTGCGGTCGAAGCTTCCGGCGAGGCTTTAGCTACCGGGAGCATATGGAAATGCACAACAATCAATCAAGCTACAACTGTCCGACGTGCAACAAAAGCTTCAAGCGTCCGCGATATCTCCAGGCGCACATGCTTACCCACACGTCGGAGCGCAAGTTTTCGTGCGAAATCTGTGGCAACTGTTACAAGACGAATGGGGAGCTGaagaagcacaataaaaacaagcacGAGCTCGACATTTTAGAGCAGGACGTGGTCATCGAAACTGATGATCAGTATATTGTGGAGTacgtttag
- Protein Sequence
- MEAANVSKQSSERGASMPAERSKPVDEKLPAEVMSEEFCRICLLKSTKVKPLMERVDGVMIPEMLYKLCGRQIEVQEGYPRSICQRCVCHLDCAFRFLNEFHQQDERLRSFYWSGSVAERLQEYQSEGKEKIHRRMEELTSRHKALFKQPAKVMSNKETNTVRSKPPKTHDVGTSMDKELINLQLVKTEDNSDDDMLLEHYVMEEDNEETYLDYCVDSETTAKDQQLVAMKIDVLESADEAESYSDEKPPSTKASKSTRQQPMRSKKTRVKIASSDTQDESIPTDTDDQAHEQVYYEETGSEEEEEEEEEEEMFDDLQCYICDMKEENEELLQQHLDLHNTMLPYDCKSCLDDGVIVRTIKTVSSLHNHFRSHHYPYWCEICGKRFLRKMQLRKHKENHSNSLFMCDECGRGFTHKKTWQNHIKRHKALRAEMYKCNTCGKAFGNKARLDRHMRLHTGDRPFECKYCDKRYYDRHQLQCHTERHFREIDCTCEFCGDTFTGIKKLDAHKIAKHLTGKELEDFLASRAKRVKRQAILKDETCPYPECNYTAKTYGAMYVHKRTKHLAKHRCGICNKSFAFQNQLEVHVKLHTGEKPFQCELCGRSFRRGFSYREHMEMHNNQSSYNCPTCNKSFKRPRYLQAHMLTHTSERKFSCEICGNCYKTNGELKKHNKNKHELDILEQDVVIETDDQYIVEYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00097947;
- 90% Identity
- -
- 80% Identity
- -