Amin000712.1
Basic Information
- Insect
- Anopheles minimus
- Gene Symbol
- Rfx2
- Assembly
- GCA_000349025.1
- Location
- KB663832.1:3295954-3327971[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.62 4e+03 -2.0 0.1 15 32 217 234 212 241 0.80 2 2 1e-36 6.4e-33 112.7 0.0 3 78 400 475 398 476 0.98
Sequence Information
- Coding Sequence
- ATGGCGACGCGTCTAGCTACACAACGCAATTTTATTACCGTAATACCCGCAACTACCGGCAGTCCTGCAACTGCAGCTTCCGTCACAATCGACTCATCGGATAAAGGTGTTGCGGTACAAAAATCTAACGCAGACTCCGGTGATAGTGGCAACACTACCAACGGTACTAGACAGCTGGAGGTGGCAACGGTTAGTGTAGCGAGCGCAGCAACTGGCATGGCATCACGACCCTCCAGCTCCTCACAATTGCCCACGATCGCCATCACTGGCGGTCTGAAGAATGGAAGCGCAAAAGGCGCAACACTCATGTCCACAAATCTGCTGTCAAATAATTCCAACATTATGAACCTTCTGGGCAGTGCGAATGGACTTTCGTTGCAGCAAATCATTCAGCAGcagaaaaaaattgtgataaaTACAAACGGAACCCTGATCGATCTCGTTCCCTTAAACGATGAAAGCGAAATTGTTGAGGCAAAGCCCGATGATGAGAAGCTGTTGGATGGATCGACTGCAAACGAAAGTGTTGAAAGTGGTAGTTCCTCGGAAGCGACTGGTGAGGAGCCGACACAGGTGACGGCACAGGTAGCGGTCGTGCAAAGCCAAAGTCCTGGCAGTGGCACACCACAGTACATAACTGTAACAGtTTCGTCACCCGAGAGTGTTCCCAACCATCACACGTACGTGCAGTATGTCGACTCGGAAATGTACAACACTTCCGGCCAGGGACAGTCACAAATGACATATCCCGTGTATTCCGTTGGAGATTATGGCACCAATggacaacagcagcaacagcagcaacaacaatattaTACTACGGGAGGAAACTACGGTACAGCGGTAACCGGTACCGGCAACACTCACACCGATTCCACCGGTGCCGCCAATGGTGCGGCAAATGGTTCGGTCACCCCGGGAAATGGCCCCAACAGTGTCAACGCTAACGGTACCGTACCGTCCGGCAATGGTGGTTCCGCTGGCGGCAATGCTAATCAGCAGCAGTACATTGTCCCCGTTGATGAGGCGGTCCTGCTCGGTTCTGGAAACACCTCCGGaacgcaacaacagcagtcCGATTCGTCGCCACAAAACATGACGGACGTAGCGTCCTACTTGCACGCGCACCAAACAGCGGCGATAGGTCAGGAGCTTGATTCCACGCCCAACCTGACCCACGCGGCTCGCGTTCTGCCCGCCACGGTTAACTGGCTGATGGAAAACTACGAAACGGCTGATGGTGTTAGCTTGCCGAGGTCGACCCTGTACAACCACTACATGTGGCACTGTAACGAGAACAAGCTGGACGCGGTCAATGCGGCCAGTTTCGGCAAACTAATCCGTTCGGTGTTCAGTGGGTTGCGGACGCGCCGACTCGGTACGCGTGGGAACAGCAAGTATCACTACTACGGCATCCGCATCAAGCCCACGTCTCCGCTGGTGCATGCGATCGAGTGTAAACCACAGCATGGGTCCGGCGTTAGTGGGTTGATGGTTGGACACCATCAGCAGTTGTCCGGTAGTAACGGGCTTTCCGGTGGGGGAAACGGTGGCGGCGTTACGGGTGGTGCGAACAATGGGATGCATGGTCCTGGTGGTGGCAATCATGCGAACGGCGGTCTGCATGCTACCAATGGCGGTAGTTCCATGGCCCACGGTGGTGGAGGTACTGGTGGAGGACACTTGCAACACGGTGCTGGAGGAGCTGGCAATGGTGGAGGAAGCACTGGTCACGGTATGTCGATGCACCATGGGCGAAGTGGTaagaaaaacagtttcaagGCGGAAATGCCGGAATCCTGCGCGCAGTATCTCGGTGATCCAAACGGTGCCATACCGCAGTTTCCGATCATTGACATGATCCACCCACTGCCGGACGATATCACGATGGAGGACGTGGACACGTTGCGCTCGATCTATCGCGAACACTGCGAAGCGTTCCTGGACGCGATTCTGAACCTCGACTTCAACATGATCGAGTCGCTGTGGCGCGAGTTTTGGCGTGCggagaacaacaacaacaacggggACGAATGCGAGGAAGAGAAGTATCTCAGCAAGCAGAAGCTGTACCTGCTGACGCAGTGCGAATCGGTGCAGGAGTTTGTGAAGCACGTCGATATGCAGTTCTACCAAAGCATGGTGGATGTGCTGATACCGGACGTGCTGCGACCGATCCCGACCGGTCTGACGCAGGCGATTCGCAACTTCGCGAAGAACCTGGAGAACTGGTTGACGTCGGCGATGGGCGGCTGTCCGGAACCGATCGTCGCGATCAAGCTCACCGCGGTGGCCGCATTCGGGCAAACGCTACGCCGCTACACCTCGCTTAACCACCTGGCCCAGGCGGCCCGTGCCGTGCTGCAGAACGGCACCCAGATCGCACAAATGCTGAGCGACCTGAACCGTGTCGACTTTCGCAACGTACAGGAGCAGGCCTCCTGGATCTGTCAGTGCGATACTGCGATCGTGCAGCGGCTGGAGAACGACTTCAAGGCGGCACTGCAGCAACAGAACACACTGGAGCAGTGGGCCGGCTGGCTGCAGAACGTGGTCGATGATGCGCTGCAGGAGTACCGGGGCAAACCGAGCTTCGTGAATGCCGCCCGACAATTTCTGCTGAAATGGAGCTTCTACAGCTCGATGGTGATCCGCGATCTGACGCTCCGTTCGGCTGGCAGCTTCGGTAGCTTTCATCTGATACGCTTGCTGTACGATGAGTACATGTTCTTCATCATCGAGCATAAGGTTGCCAAAGCGACCAACACTACGCCGATTGCAGTTATGGGTGAGaaaataaattcccgCCCCGTTCAAGACGATCTCGACCGCATGCTCTACAACAGCGAGTACGGCATGGTGAACGTCAAGCTGGAACCGAACGCCAAGCGGATGCGCAGTTAG
- Protein Sequence
- MATRLATQRNFITVIPATTGSPATAASVTIDSSDKGVAVQKSNADSGDSGNTTNGTRQLEVATVSVASAATGMASRPSSSSQLPTIAITGGLKNGSAKGATLMSTNLLSNNSNIMNLLGSANGLSLQQIIQQQKKIVINTNGTLIDLVPLNDESEIVEAKPDDEKLLDGSTANESVESGSSSEATGEEPTQVTAQVAVVQSQSPGSGTPQYITVTVSSPESVPNHHTYVQYVDSEMYNTSGQGQSQMTYPVYSVGDYGTNGQQQQQQQQQYYTTGGNYGTAVTGTGNTHTDSTGAANGAANGSVTPGNGPNSVNANGTVPSGNGGSAGGNANQQQYIVPVDEAVLLGSGNTSGTQQQQSDSSPQNMTDVASYLHAHQTAAIGQELDSTPNLTHAARVLPATVNWLMENYETADGVSLPRSTLYNHYMWHCNENKLDAVNAASFGKLIRSVFSGLRTRRLGTRGNSKYHYYGIRIKPTSPLVHAIECKPQHGSGVSGLMVGHHQQLSGSNGLSGGGNGGGVTGGANNGMHGPGGGNHANGGLHATNGGSSMAHGGGGTGGGHLQHGAGGAGNGGGSTGHGMSMHHGRSGKKNSFKAEMPESCAQYLGDPNGAIPQFPIIDMIHPLPDDITMEDVDTLRSIYREHCEAFLDAILNLDFNMIESLWREFWRAENNNNNGDECEEEKYLSKQKLYLLTQCESVQEFVKHVDMQFYQSMVDVLIPDVLRPIPTGLTQAIRNFAKNLENWLTSAMGGCPEPIVAIKLTAVAAFGQTLRRYTSLNHLAQAARAVLQNGTQIAQMLSDLNRVDFRNVQEQASWICQCDTAIVQRLENDFKAALQQQNTLEQWAGWLQNVVDDALQEYRGKPSFVNAARQFLLKWSFYSSMVIRDLTLRSAGSFGSFHLIRLLYDEYMFFIIEHKVAKATNTTPIAVMGEKINSRPVQDDLDRMLYNSEYGMVNVKLEPNAKRMRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00103424;
- 90% Identity
- iTF_00101433;
- 80% Identity
- -