Amel008278.1
Basic Information
- Insect
- Anopheles melas
- Gene Symbol
- -
- Assembly
- GCA_000473525.2
- Location
- AXCO02018091.1:1103-5467[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.27 15 6.1 0.1 2 23 195 217 194 217 0.91 2 9 0.38 21 5.7 3.0 1 21 991 1013 991 1015 0.93 3 9 0.49 27 5.3 0.9 2 20 1026 1045 1025 1049 0.92 4 9 2.4e-07 1.3e-05 25.2 1.4 1 23 1085 1107 1085 1107 0.98 5 9 0.0012 0.063 13.6 0.6 2 23 1170 1192 1169 1192 0.92 6 9 0.00024 0.013 15.8 1.3 1 23 1209 1231 1209 1231 0.96 7 9 0.042 2.2 8.7 6.8 1 23 1237 1259 1237 1259 0.98 8 9 0.0009 0.048 13.9 2.4 1 23 1267 1290 1267 1290 0.97 9 9 0.24 13 6.3 0.7 1 23 1299 1321 1299 1321 0.98
Sequence Information
- Coding Sequence
- ATGGATATATTTCAAAACCAATGCAGCGAGAGCTTAGGCTTCGATTCGATGCTTTCGTCGAACCATCTACACTCACCGCTGCACGATTCGCCCTGCTCGCCGACGAACCCGTACGCACCATCGTCGCCCTACTTTTCCTCCATCTCGCAGCAGCCGACCGGCCACACCAGCGGACCGAACGATGTCATCCTACCGAGCATTTTCGTCAAAATTCCGACCCAAATCAACCAGCAGTACCAGCAGCAGGAAAGCCGGCTGCTCCGATCCACCCATCATAGTACCGCGAGCGAAATCAAGTGCGAGGAACGGTCGGACTCGATCAAGAGCGAGATAGCCGATACACGGGTACGGCTGGCGGGGAATGGTCTTGCAAGCGCCGACCACCGGCTGCCGGACGTGATCGATAACTATCTGAACGATACGGACCGGGTGGAGCCGGCGGAGGTGGTCCCGAACATGCGCACGTGTGACCGTTGCCCTTTTGCCACCCTTTCGGAGGTGCGGCTGAGCGAGCATCGACGCGAAAGGCATCCGGGGGGAGGTGTTGGCGTAGGGCCACAAGAGTCGCAGGCGGAAAAGCTAAGCTGTCCGGTGTGCGAGAACAAATTCTACAAAAAAGCCGTGCTAGAGCTGCACCTTACCGAGGACCATGAAATGTTGGCCAGCGAGGTGGCAGCATTGGGCCACAGTACCGTCACAACCCTCCAGTCGGAAAGGGGTACTGCACCGGAAGTTAGAATCGAACCGACGAGCCAGCAGAACTGTGTTGAGATTTCGCCGGGACCCCCAGCTGCTGCCCCTACGGCAACGTCCACGGCGACACACAGCAAAAGCCGGATCTACATAAAGGACGTACAGCTGCTGAAAAAGCCGGACGTGATTGCGCAGGAAAGCCATGACGCGCAGGGCCAGCAGCTGCTGTCGACAGAGCAGGAACCGTCCGCGATAGCGCACGGTACGCTACAGGACAGCCATCAGCTGTCGCTCGGCGAGGATATGTTGCCATCGCTCGATCAGTCGCTGGAGCTACCACCGCAGCAGCAACCATGCGCCGTCAGCGGCAACAAAATCTTCATCCGCAACGTGTCGCTGCTGCAGAATGTGAATTTCGTCGCCTCGGCGGAAAACATGCTCACGAATGGGAACGGAAATCGGTACGGTACGGCACCACCACCATCACCACAACCACCACCGCCGTCCTCCTACCTGAGCATGGACTGTGCGAACGATGGTTCCGGGGCGCTGCTGGACACGATCAACGGTGGGTATGGTGGAACGATTCCAGCACAACCTGCTCCATCCGCAGTAGTTCAATCAGCCCGGGGCAGTCGTATCTACATCAAAAACGTCGACATACTTCGGAACCACCCGCTCATAGCGCTCGATGACCCCGGGGTGCAGTGCACGAATTCGCTCTCCACGACGACGTTCAGCGAGTCGATTACGACAAGTAGAGCGAGCAGCTGCGAGAGTATTATCTGCACGTCCACACCACCCGCCACGGCGACGGAACAGCAGCAACCACCGACCGTGCCCGTAGGTGGACCATCGTCCATACCGAACAACTCCTTAGGAGCAGTGTCACAGCCGAACGATCAATCGCTTTTGCATGGCACCGAAATAAGCTATACCACCGTTGGAGGGGACGCGATGGGAAACCCGGCCCGGCAATTGCCACTAGCCGTCGATCAAGGTTCGCAGAACTTGCTGATGCTGTTTTCCACCTCGCTGGACGGTACGCCGGGTGGTGGTTCGGTTGGTGAGCCTAACGTTTCCTACCTGACCGCAAGCTCCAACATGACCGTGCAGCAGGGTGGCGAGTACGGTACGCTTCCACCTCCACCACCACCACCACCGGCACAGTGCGATGTTCAGCAGCAAACCACCGACGACGTACCGCAGCAACAGCCAAGGAAGAGCAAAATATTCATCAAAAACATCAGCGTGCTCAAGCAACCGACCATTCATCTGAAATCGGTCGACGAGGTGAATCTGATGACGTACGACGAGCTGCAGAACATACTGCCTACCGTCGGCGGGATGTCCTCCCAGGTGGGGATGGACGGTGGAGATACCATTGGTGGACCATTGGAGCAGCACGAAGCACACGAACAGCTGCTGGACGGGGCGAACCGGTTGGACAAACCGTTCGGTGGGATGATTGAAATGAACGCGCACCATTCGTCCGAGCTGGTGGTGCACGATAATGTCGAACAGCACGGCGATGGCGACGACGATGACGTTATGGATGAATACCACGAGTCGGATCTCGGCTACGGTGAACTGAGCGATGTGTGCGACTTTACCGAAGGTTTCAACGACCGAGACGATCCCGGCGGAGGAGAAGGAGGAGGAGCAGGAGCAGCAGGAGCCGGTGGTATCGATATGACGGCGTGCACAGCCAATGATGATACGAACCGTAACGATCACTTGGTGGTGGAATCGACCCACTGTGAGCCAACGCTCCCGCCCGGGTCCGGTTTTACGGGCGACATTATACTGCTGCAGGAAGAATCGGATGCAAGCGAGAAGATCACACCGAACCACGAATGGGCCGCGATCGTCGAGCCGGCGAATGGTGGTGGGCCACCGTTGGGGCAGGACATTTTGCAGCAACCGATGGAAATGGCTGACGGTAACGAAGTTAATCCGTTGCGACGAGAGGAAGAACTGCTGCTGGGCAACTCTCACCCTCATGTGATCAATCTCGATCCTCCCAATGAGTACCATCCACCGGTTGGCGATAGTGAGGCGATCGTACTGGCGGCTGCTGTGAATCCATCGATCGGGGAGACCCAACAACCGGTGGATGCATTAACACCATCCCAAGAAGAGGCGAATGTGTCGGCTGTCACCGCGCTTGCTGAACCAGATCGTCCCCGTACCCGTGGACGGCCAAAGGGGGCGAAACAGACCGGCATCACTAAGCTGAAGAAGCTCTACACCAACCTAACCGTCGAGGAGGAAGGCTACAAGTGTGACCTGAAGGACTGTGGGGTGCGGTTTCGCCAGCTGGATCGGCTCGACTACCACCGCAAGTGTCACGTGGTGGCGCCCGACAGCCCCAATCCCATCCACTGTCCGGAGTGTGGTTCGCTCGAGTTCCGCAACTGGAACACGCTGCACACCCATCTGTGGCGGGAGCACGCGATCGACATGGAGCTGTACGCGTGCCATCTGTGCAGCTTCAAGACGCCCGTCCTGTGCCGGCTGAACAACACGCACATGAAGATCCACTCCGAGGAGCGAAACTTCAAGTGTGCCATATGTGGGAAAGCGTTCAAGAACAACAAACAGCTGCGCAATCACCGCCGGTGGCATCGGGAACCACAGCAGCAGCAGCAGCAACCGCAACACCAAGAAGCACCCGTGGTGGAGGAGCAACAGCCGGCCAGTCAACCACCACCGGTGGAAGAACCTCCTGCGATCGGCCCAACCCAATCGAACGATGCGTCCCAGGGCGACAAACCGAAGGCAAAATCCACATCCATCCAGCAATCCACGATGAAGTGCGTCAAGTGTGGGCTGCGGTTCGCGGGCAAACGCCAGCTAAGGACGCACATGGACGCAAAGCATCCCACCGAGGCGGGCGAGCCGGGGTCGACGGAGGTGAGCGCCGCCAAGCATCGCTGCCTACTGTGCGGTATGGTGTTCCGGACGCGCTACCTGCTCCAGTCACACGCGGCCAAGCACTCGGACGAGAAGCGGTTCAAGTGCGAGCATTGCGAGTACACTACCAACGACCACAACGCGTTCCGGCGGCACAAGATGCGCCACAGCACCAAGGGTGGCCATATGTACAAGTGCAGCTACTGCGATTACAGCAGCATCCAGAGCACGACCTACCGGAAGCACCTGGAGCGGATGCATGCGGAGGTCGCCTCGGCCCTGCTGTACAAGTGTGCCAAGTGTCCGTTCGTGTCGATCAGCGAGGCCAAGTATCAGCTGCATCGGACGAAACACCAGGAGGAGGGAGGGGAAGCGCGAGAGAAACCGGTGGCACTGGGGGTGGAACCGTTGCAGGAGAACAACCCTGAGCAGCAGCAGCGTCAGTGCGAAAGCGTTAACTCGGACGTGGTGATTGTAGAGCAGCAGCGGGATGCCGTGGCGGACGGATTGAGTGCGTCACCGATGGATGTGGAGCTGCTGGGCGGGGATGCGGTTGGCGGGGGTCTACAAATCATTCAGCATCCCATCATCCGCCCGGCAATGTTTGCGAACAATTTCTCCAAGGTGGACAACTTCTACGGCTATCAAGCGTCCCAGCAGCATGGTCAGCCCTT
- Protein Sequence
- MDIFQNQCSESLGFDSMLSSNHLHSPLHDSPCSPTNPYAPSSPYFSSISQQPTGHTSGPNDVILPSIFVKIPTQINQQYQQQESRLLRSTHHSTASEIKCEERSDSIKSEIADTRVRLAGNGLASADHRLPDVIDNYLNDTDRVEPAEVVPNMRTCDRCPFATLSEVRLSEHRRERHPGGGVGVGPQESQAEKLSCPVCENKFYKKAVLELHLTEDHEMLASEVAALGHSTVTTLQSERGTAPEVRIEPTSQQNCVEISPGPPAAAPTATSTATHSKSRIYIKDVQLLKKPDVIAQESHDAQGQQLLSTEQEPSAIAHGTLQDSHQLSLGEDMLPSLDQSLELPPQQQPCAVSGNKIFIRNVSLLQNVNFVASAENMLTNGNGNRYGTAPPPSPQPPPPSSYLSMDCANDGSGALLDTINGGYGGTIPAQPAPSAVVQSARGSRIYIKNVDILRNHPLIALDDPGVQCTNSLSTTTFSESITTSRASSCESIICTSTPPATATEQQQPPTVPVGGPSSIPNNSLGAVSQPNDQSLLHGTEISYTTVGGDAMGNPARQLPLAVDQGSQNLLMLFSTSLDGTPGGGSVGEPNVSYLTASSNMTVQQGGEYGTLPPPPPPPPAQCDVQQQTTDDVPQQQPRKSKIFIKNISVLKQPTIHLKSVDEVNLMTYDELQNILPTVGGMSSQVGMDGGDTIGGPLEQHEAHEQLLDGANRLDKPFGGMIEMNAHHSSELVVHDNVEQHGDGDDDDVMDEYHESDLGYGELSDVCDFTEGFNDRDDPGGGEGGGAGAAGAGGIDMTACTANDDTNRNDHLVVESTHCEPTLPPGSGFTGDIILLQEESDASEKITPNHEWAAIVEPANGGGPPLGQDILQQPMEMADGNEVNPLRREEELLLGNSHPHVINLDPPNEYHPPVGDSEAIVLAAAVNPSIGETQQPVDALTPSQEEANVSAVTALAEPDRPRTRGRPKGAKQTGITKLKKLYTNLTVEEEGYKCDLKDCGVRFRQLDRLDYHRKCHVVAPDSPNPIHCPECGSLEFRNWNTLHTHLWREHAIDMELYACHLCSFKTPVLCRLNNTHMKIHSEERNFKCAICGKAFKNNKQLRNHRRWHREPQQQQQQPQHQEAPVVEEQQPASQPPPVEEPPAIGPTQSNDASQGDKPKAKSTSIQQSTMKCVKCGLRFAGKRQLRTHMDAKHPTEAGEPGSTEVSAAKHRCLLCGMVFRTRYLLQSHAAKHSDEKRFKCEHCEYTTNDHNAFRRHKMRHSTKGGHMYKCSYCDYSSIQSTTYRKHLERMHAEVASALLYKCAKCPFVSISEAKYQLHRTKHQEEGGEAREKPVALGVEPLQENNPEQQQRQCESVNSDVVIVEQQRDAVADGLSASPMDVELLGGDAVGGGLQIIQHPIIRPAMFANNFSKVDNFYGYQASQQHGQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00102583;
- 90% Identity
- iTF_00101288;
- 80% Identity
- -